PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01588.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 331aa    MW: 37201.4 Da    PI: 7.4303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01588.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33169225258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h
  Rsa1.0_01588.1_g00008.1 169 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 225
                              8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.6E-1101331IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.6E-34153227IPR003657WRKY domain
SuperFamilySSF1182901.7E-28160226IPR003657WRKY domain
PROSITE profilePS5081130.963163228IPR003657WRKY domain
SMARTSM007741.0E-38168227IPR003657WRKY domain
PfamPF031067.5E-26169225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEFTSFYHPS SLSVWDLGDF MGTERDSFEL LGSQQHHQFQ DYASPHSLLL ETLQPQMQPF  60
VKLPSADSMI FQAPLSNATA DKSVTSRVET LCSDHLLINS PATPNSSSIS SASSEAVNEE  120
KAKRVDQEEE EGHTKSDTNK QLKPKKNSLK RQREARVAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPFPRS YYRCTTASCN VKKRVERSFR DPSTVVTTYE GQHTHISPLT SRPISTGGFF  240
GSSGVASNLG GNFGFPMERS TVISPQFQQL VHYHQQQQQQ ELLSCFGGVG QYLNSHTHGY  300
GDDERVKKSR GLVKDNGLLQ DVVPCHMLKE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27158228777Probable WRKY transcription factor 4
2lex_A1e-27158228777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01588.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300410.0KF430041.1 Brassica rapa WRKY transcription factor 23 (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478508.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-148WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D3C6P50.0A0A0D3C6P5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CLS50.0A0A3P6CLS5_BRAOL; Uncharacterized protein
STRINGBo4g198560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-139WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]