PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01570.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 322aa    MW: 35314.8 Da    PI: 8.9687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01570.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-1259103147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Rsa1.0_01570.1_g00005.1  59 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 103
                              789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129413.75854108IPR017930Myb domain
TIGRFAMsTIGR015572.4E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-657109IPR009057Homeodomain-like
SMARTSM007179.6E-1058106IPR001005SANT/Myb domain
PfamPF002496.2E-1059103IPR001005SANT/Myb domain
CDDcd001671.35E-761104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVSKNPNPAD GCFLDPNGMT VVPAIGPFTA VAADATETVS SSEDLSKKIR KPYTITKSRE  60
SWTEPEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA QKYFLKVQKS GTGEHLPPPR  120
PKRKAAHPYP QKAHKNVQPQ LPGSFKASAP EPIDPSYMFR PESSSMLMTS PTTAPAAAAP  180
WTNNNVQTIS FTPLPKAGAG ANNNCSSSSE NTPKPRSNRD TNEQANPGHS LRVLPDFAQV  240
YSFIGSVFDP YASNHLQKLK KMDPIDVETV LLLMRNLSIN LSSPDFEDHR RLLSAYDIGS  300
ETATDPGGVS KTLNKEAPEI ST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01570.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472984.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A078IPE30.0A0A078IPE3_BRANA; BnaC03g15430D protein
TrEMBLA0A3P6A8B50.0A0A3P6A8B5_BRAOL; Uncharacterized protein
STRINGBo3g023120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-163MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]