PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01567.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 689aa    MW: 76296.5 Da    PI: 6.9581
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01567.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-194598356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             k +++t++q++eLe++F+ +++p++++r eL +kl+L+ +q+k+WFqNrR+++k
  Rsa1.0_01567.1_g00002.1 45 KYRRHTSYQIQELESFFKVCPHPNEKQRLELGSKLSLESKQIKFWFQNRRTQMK 98
                             56789**********************************************999 PP
2START168.25.5e-532104283205
                              HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                    START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                              a  a++el+++a+++ p+W k s    +s + de+++ f+ sk   +  e +r++g+v  ++ +lve+l++++ +W e+++    +
  Rsa1.0_01567.1_g00002.1 210 AVVAMDELIRLAEVDNPLWIKCSkserDSMKHDEYTSLFAGSKHpgFAAEGSRETGLVLINSLTLVETLMNTN-RWAEMFEcivaA 294
                              56689******************88888888999999998888778888889*********************.************ PP

                              EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                    START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                              a+t+evis+g      g lqlm ae+q++splvp R + f+Ry++q+g+g w++vdvS d++++ +  +s+   ++lpSg++ie+ 
  Rsa1.0_01567.1_g00002.1 295 ASTVEVISNGsggsrnGSLQLMEAEFQVMSPLVPiRQVKFLRYCKQHGDGLWAVVDVSYDVNRESQDLKSYDGLKRLPSGCIIEDI 380
                              ****************************************************************99899999999*********** PP

                              CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                    START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +ng skvtw+eh +++g+++h l+++l++s++  ga +w+atlqr ce
  Rsa1.0_01567.1_g00002.1 381 GNGCSKVTWIEHSEYEGSHIHPLYQQLLSSSVGLGATKWLATLQRRCE 428
                              ***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-1928100IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1736100IPR009057Homeodomain-like
PROSITE profilePS5007116.40640100IPR001356Homeobox domain
SMARTSM003892.7E-1542104IPR001356Homeobox domain
CDDcd000861.48E-1545100No hitNo description
PfamPF000461.3E-164598IPR001356Homeobox domain
PROSITE profilePS5084844.819199432IPR002913START domain
SuperFamilySSF559612.09E-30203430No hitNo description
CDDcd088758.41E-107204428No hitNo description
SMARTSM002346.5E-42208429IPR002913START domain
PfamPF018525.2E-47211429IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-4269413IPR023393START-like domain
SuperFamilySSF559616.48E-19457682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MNGDLDITKG DDEFESDSLE EMSGDDDDNK HEQRPKKKKK KKMSKYRRHT SYQIQELESF  60
FKVCPHPNEK QRLELGSKLS LESKQIKFWF QNRRTQMKTQ LERHENAILR QENEKLRVEN  120
GILKEAMRSP TCTNCGGAAT PGEVSHEQQQ LRMENAKLKY ELDKLCALAN RFIGGSISLE  180
QPSNGGGVGS QDLSLGHGFT RGTSTFMDLA VVAMDELIRL AEVDNPLWIK CSKSERDSMK  240
HDEYTSLFAG SKHPGFAAEG SRETGLVLIN SLTLVETLMN TNRWAEMFEC IVAAASTVEV  300
ISNGSGGSRN GSLQLMEAEF QVMSPLVPIR QVKFLRYCKQ HGDGLWAVVD VSYDVNRESQ  360
DLKSYDGLKR LPSGCIIEDI GNGCSKVTWI EHSEYEGSHI HPLYQQLLSS SVGLGATKWL  420
ATLQRRCESY TTLLSSQDQT GLSLAGTKST QTLAQRMKLS FYSGITASPI HKWEKLVAEN  480
VGQDTRILTR RSLQPSGVVL SAATSMWLPV TQQRLFEFLC DSKCRNQWDI LCNGASVENM  540
LLIPKRQREG RCVSLLQPAG KHQSGNSMLI LQETWSDASG ALVVYAPVDV PSMNMVMSGG  600
DSANVALLPS GFSISPDGSS SSSSSWYDQI DTHGGFVNHE SKGCLLTVGF QILVNSVPTT  660
KLNMESVQTV NNLIACTIHK IKAALSIPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01567.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456926.10.0PREDICTED: homeobox-leucine zipper protein HDG7
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A3P6CY220.0A0A3P6CY22_BRACM; Uncharacterized protein
STRINGBra028295.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]