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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_01556.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
GRAS |
| Protein Properties |
Length: 338aa MW: 38439.6 Da PI: 6.9585 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01556.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 366 | 5.2e-112 | 13 | 338 | 61 | 374 |
GRAS 61 ykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp...... 136
+++ ++++++n s+ + + l +++++P+++fshltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+
Rsa1.0_01556.1_g00002.1 13 KEQFLFRTKNNNNNSDLESCYYLwLNQLTPFIRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpss 98
445566666666666666665556************************9888799*************************765555 PP
GRAS 137 .egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrle..dleleeLrvkp..gEalaVnlvlqlhrlld 215
++pslRiTg+g+ + + l++tg+rL++fA++lg++f+f++l v+++++ l+++ L+++ gE++aVn+v+ lhr+l+
Rsa1.0_01556.1_g00002.1 99 sTPAPSLRITGCGR----DVTVLNRTGDRLTRFANSLGLQFQFHTLvtVEEDFTglLLQIRLLALSAvqGETIAVNCVHFLHRFLN 180
55599*********....***************************965444443114577777666666****************8 PP
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
e++ ++L+++ksl+P++v+++e+ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e
Rsa1.0_01556.1_g00002.1 181 EDHGDMF--GHFLSAIKSLNPRIVTMAEREANHGDPSFLTRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAE 264
8776655..8**************************************************************************** PP
GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
aer++rh+++e W+e++++ GF +vp++++a +qaklllr ++ s+gy+++ ++sl+lgWk+r L+svS+W+
Rsa1.0_01556.1_g00002.1 265 AAERKQRHRRFEVWEEMMKRHGFVNVPIGSFALSQAKLLLRLHYpSEGYNLQFLNDSLFLGWKNRLLFSVSSWK 338
*************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MTSSTVFTSS VCKEQFLFRT KNNNNNSDLE SCYYLWLNQL TPFIRFSHLT ANQAILDATE 60
TNNGNGALHI LDLDISQGLQ WPPLMQALAE RSSSNPSSST PAPSLRITGC GRDVTVLNRT 120
GDRLTRFANS LGLQFQFHTL VTVEEDFTGL LLQIRLLALS AVQGETIAVN CVHFLHRFLN 180
EDHGDMFGHF LSAIKSLNPR IVTMAEREAN HGDPSFLTRF SEAVDHYMAI FDSLEATLPP 240
NSRERLTLEQ RWFGKEILDV VAAEAAERKQ RHRRFEVWEE MMKRHGFVNV PIGSFALSQA 300
KLLLRLHYPS EGYNLQFLND SLFLGWKNRL LFSVSSWK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ324235 | 0.0 | HQ324235.1 Brassica rapa cultivar 1151 transcription factor LAS (LAS) gene, complete cds. |
