PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Rsa1.0_01537.1_g00017.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 118aa MW: 13770 Da PI: 8.4944

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01537.1_g00017.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.1	7.6e-30	4	95	2	93
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 Ca Ck r+kC+++Cvl py+pa++p+++a++ +F ++n++++lk++++++r++ ++sl++eAear+rdPv+G +g+i++ q+++++ Rsa1.0_01537.1_g00017.1 4 CAICKEERQKCTQKCVLTPYLPANKPESYACLVYVFDVKNLVRILKEIDPSQRQACVDSLCFEAEARIRDPVNGTLGIIRDNQRRIQH 91 ***************************************************************************************9 PP DUF260 90 lkae 93 l+ e Rsa1.0_01537.1_g00017.1 92 LQRE 95 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.873	2	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-30	4	95	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MELCAICKEE RQKCTQKCVL TPYLPANKPE SYACLVYVFD VKNLVRILKE IDPSQRQACV 60 DSLCFEAEAR IRDPVNGTLG IIRDNQRRIQ HLQREQWELL SLRNALRELA MNHGRSRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	4	95	12	103	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	4	95	12	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01537.1_g00017.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A397YVE5	3e-50	A0A397YVE5_BRACM; Uncharacterized protein
STRING	Bostr.6864s0195.1.p	6e-30	(Boechera stricta)
STRING	XP_010431215.1	8e-29	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-26	LOB domain-containing protein 25