PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01481.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRF | ||||||||
Protein Properties | Length: 378aa MW: 41644.9 Da PI: 8.1925 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.4 | 7.9e-26 | 141 | 185 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e+ Rsa1.0_01481.1_g00006.1 141 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVET 185 79****************************************996 PP | |||||||
2 | QLQ | 53.7 | 6.2e-19 | 72 | 108 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k Rsa1.0_01481.1_g00006.1 72 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 108 67*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-12 | 72 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.247 | 73 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-13 | 74 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.046 | 141 | 185 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.9E-22 | 142 | 184 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006995 | Biological Process | cellular response to nitrogen starvation | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0051365 | Biological Process | cellular response to potassium ion starvation | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDLQLKQWRS QQVQTESEQQ PSAAKIPRHV FDPIQSQTAT STVLPLFSPE PTSSKLSSLC 60 PDSSSRFPKM GSFFSWAQWQ ELELQALIYR YMLAGAAVPQ ELLLPIKKSL PHLSPSYFLH 120 HPLQHLPHYQ PAWYLGRGAM DPEPGRCRRT DGKKWRCSRD VFAGHKYCER HMHRGRNRSR 180 KPVETPTVNA TATTTSMDAP APAAPSATPS SFAFGGGEEV SQGGSSSFFF SSQSCSEMKQ 240 ESSNHNNNNN KRPYESHNGF GSNGSDGGHI LRHFFDDWPR SEADNSSSPM SSATCLSISM 300 PGNSSSDVSL KLSTGNEEEA RNNNSGRDQQ NMSWWSGGGT NHNHHHMGGP LAEALRSSSS 360 SSPTSVLHQL GVSTQAFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01481.1_g00006.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117417 | 0.0 | AK117417.1 Arabidopsis thaliana At2g36400 mRNA for unknown protein, complete cds, clone: RAFL17-02-B13. | |||
GenBank | AY102636 | 0.0 | AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds. | |||
GenBank | BT026472 | 0.0 | BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133081.1 | 0.0 | PREDICTED: growth-regulating factor 3-like | ||||
Swissprot | Q9SJR5 | 0.0 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | M4E2R5 | 0.0 | M4E2R5_BRARP; Uncharacterized protein | ||||
STRING | Bra023066.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 1e-91 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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