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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01452.1_g00011.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 567aa MW: 62219.6 Da PI: 6.2024 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01452.1_g00011.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 204 | 260 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++ g++ k + g ++ +e+Aa+a++ a++k++g
Rsa1.0_01452.1_g00011.1 204 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 260
57*******************88885445536655.779999**************98 PP
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2 | AP2 | 51.2 | 3.1e-16 | 303 | 354 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g
Rsa1.0_01452.1_g00011.1 303 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 354
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 567 aa
Download sequence Send
to blast |
MNNNWLGFSL SPYEQNHHRQ EVDSSTPITA VDVTGEFCYN LTAASDGTSA VQTSFPSPFG 60 VVLDAFTRDT NSHSRDWDIN GSACNNIHNN EQDGPKLENF LGRTTTLYNI NENGGDGSGG 120 YGEDDGSGGS LGLSMINTWL RNQPVANVDN QENGNGARGL SLSMNSTTSC DSNNDNNSIV 180 VAQGNDSVEA APKKTIESFG QRTSIYRGVT RHRWTGRYEA HLWDNSCKRE GQTRKGRQGG 240 YDKEEKAARA YDLAALKYWG TTTTTNFPMS EYEKEVEDMK HMTRQEYVAS LRRKSSGFSR 300 GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFGTQEE AAEAYDIAAI KFRGLTAVTN 360 FDMNRYNVKA ILDSPSLPIG SAAKRLKEAN HTVPSMMRIR NNVSESENNG SGWQNVAVQH 420 HQRVDLSLLQ GHQESYNGYY NGGNVSSESA RACFKQEEDQ HRFLTNINHH SSATDDSVTV 480 CGNVAGYGGY QGFAAPVNCD AYAGAEIAYT ARNQFYFAQQ QHQIQQSPEG DFAAAMSNNV 540 GSNMYFHGEG GGGGGEGAPT FTVWNDT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF317904 | 0.0 | AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds. |