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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01444.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 69aa MW: 8172.3 Da PI: 9.5226 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.8e-08 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r +W++eE+ l+ ++ ++G+g W+ I + R+ ++k++w++ Rsa1.0_01444.1_g00010.1 5 RRKWSAEEEAALLAGICKYGPGKWSYIINDPEfrtqlSYRSNIDLKDKWRNM 56 789***************************999999989**********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.501 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-15 | 4 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-4 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-14 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.72E-17 | 6 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MYAQRRKWSA EEEAALLAGI CKYGPGKWSY IINDPEFRTQ LSYRSNIDLK DKWRNMTTKE 60 ESKTLVNQI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01444.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077814.1 | 3e-22 | Homeodomain-like/winged-helix DNA-binding family protein | ||||
Refseq | NP_177418.2 | 3e-22 | Homeodomain-like/winged-helix DNA-binding family protein | ||||
Swissprot | F4IEY4 | 3e-23 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A397Y6S3 | 3e-39 | A0A397Y6S3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EQ23 | 3e-39 | M4EQ23_BRARP; Uncharacterized protein | ||||
STRING | Bra030894.1-P | 5e-40 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16580 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 1e-25 | MYB_related family protein |
Publications ? help Back to Top | |||
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