PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01435.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39727.2 Da PI: 8.0179 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.1e-16 | 14 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++ +G g+W+++++ + R++k+c++rw +yl Rsa1.0_01435.1_g00002.1 14 KGLWSPEEDEKLLNHITIHGHGCWSSVPKLAEsatgLQRCGKSCRLRWINYL 65 678***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 71 | 113 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE+ l+v++++ lG++ W+ Ia++++ gRt++++k+ w+ Rsa1.0_01435.1_g00002.1 71 RGAFSPEEESLIVELHAVLGNR-WSQIAARLP-GRTDNEIKNLWN 113 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 6 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.613 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-28 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-10 | 17 | 65 | No hit | No description |
PROSITE profile | PS51294 | 24.579 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-14 | 71 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-10 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT IHGHGCWSSV PKLAESATGL QRCGKSCRLR 60 WINYLRPDLK RGAFSPEEES LIVELHAVLG NRWSQIAARL PGRTDNEIKN LWNSSIKKKL 120 RQRGIDPNTH KPISEVDKDK PTRSSNNDHK SPSSSAATNQ DFFLERPSDF SDYFGLQKLN 180 FNSNLGLSAT PESSLCTMIP GQFSPGNMVG SVFQTQVCVK PSISLPPDSS SSTVSRGDHA 240 ASNWEFQTNN TSNFFDNGGF SWPIANPSSS VVKPNHNFEE VKWSEYLNTP FFNGSTVQSQ 300 NSQQICIKSE AEYLAKVSNM TDPWSQSQNE NLGTPEASDV FSKDLQRMAV SFGQSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 12 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01435.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189331 | 0.0 | AC189331.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037O12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449721.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q8VZQ2 | 0.0 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A3P6BPI4 | 0.0 | A0A3P6BPI4_BRACM; Uncharacterized protein | ||||
STRING | Bra030783.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 0.0 | myb domain protein 61 |
Publications ? help Back to Top | |||
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