PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01430.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 609aa    MW: 69271.3 Da    PI: 4.931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01430.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.94.1e-1212346041374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  +f+eAL+ar+++    ++k+      s++ +++ l+a+k f++
  Rsa1.0_01430.1_g00012.1 234 MRNLLMQCAQAVASFDQSRAFEKLKEIREHSSSHGDATQRLGYHFAEALEARITG----TMKTPGFDVLSRTPMVDILKAYKEFVQ 315
                              579****************************************************....666666666666669************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+l +++ taN++I e +++++++Hi+Df+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++
  Rsa1.0_01430.1_g00012.1 316 SCPTLAMCYYTANRTIFELASKATTLHIVDFGILYGFQWPCLIQALSTRPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCD 401
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++ vpfe+n+ +ak++++++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ L l+++++P+++v++e +  +ns+ Fl+r
  Rsa1.0_01430.1_g00012.1 402 KFSVPFEYNF-IAKAWDTITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALTLFRDINPDLFVFAEINGMYNSPFFLTR 486
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f ea+ ++s+lfd++e+++++e++ r+ vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r
  Rsa1.0_01430.1_g00012.1 487 FREAMFHCSSLFDMFESNISEENDCRTLVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVR 572
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + + + + ++++++++++gWk+r L+++S+W+
  Rsa1.0_01430.1_g00012.1 573 ERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 604
                              ***888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.755208584IPR005202Transcription factor GRAS
PfamPF035141.4E-118234604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDAILQVPVD GFRLDNGSGS CCKPRNNLDS GTSRFTCFKE SESQSLSSPT ESTESQNPCS  60
TEESTVCSTN HPVLKYINDM LMEEDIEEQS CMLEDSLALQ AAERSFFEVL QEGQTPPPPS  120
DQISSDQDNC SIENFSSITS LLHQPTLGFP EISEESTRRY RLRGDDDEED DLESERRSKL  180
PAISVVDELA EKLEEVLLVC QKNDHGEATL NKTGRAKGPL NRSKAQKSDQ PVDMRNLLMQ  240
CAQAVASFDQ SRAFEKLKEI REHSSSHGDA TQRLGYHFAE ALEARITGTM KTPGFDVLSR  300
TPMVDILKAY KEFVQSCPTL AMCYYTANRT IFELASKATT LHIVDFGILY GFQWPCLIQA  360
LSTRPGGPPK LRVTGIELPQ PGFRPSERVE ETGRRLKRFC DKFSVPFEYN FIAKAWDTIT  420
LDELVINSGE TTVVNCILRL QYTPDETVSL NSPRDTALTL FRDINPDLFV FAEINGMYNS  480
PFFLTRFREA MFHCSSLFDM FESNISEEND CRTLVERELI IKDAMSVIAC EGAERFARPE  540
TYKQWQVRIL RAGFRPAKLN KQIMKEGKEL VRERYHKDFV IDNDNHWMFQ GWKGRVLYAL  600
SCWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-452186051379Protein SCARECROW
5b3h_D5e-452186051379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01430.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471716.10.0PREDICTED: scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A0D3A8U70.0A0A0D3A8U7_BRAOL; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]