PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01428.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 298aa    MW: 33481.9 Da    PI: 10.2814
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01428.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix735.4e-2364144286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              Wt++e+l+Li+ +++++ +++rg l+ ++Wee+s ++  + g+ers++qC++k+e+l+kr+k+++++++       s +p+++q++
  Rsa1.0_01428.1_g00002.1  64 WTEDETLLLIDSYKQKWYAVGRGPLRSNQWEEISVAVsGRSGVERSATQCRHKMEKLRKRFKAERQSMGPI-----SIWPFYSQMD 144
                              ***********************************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.59764121IPR017877Myb-like domain
PfamPF138371.3E-2064146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATPSPTPSP PSDSNPNHAA TPPHQNPPPS NSTAIQTPPS PQTTVVALAA STSAVARKTQ  60
PVLWTEDETL LLIDSYKQKW YAVGRGPLRS NQWEEISVAV SGRSGVERSA TQCRHKMEKL  120
RKRFKAERQS MGPISIWPFY SQMDELDCNP APISARPLTR LPPPSNHYAE DEEDEDEEED  180
ERRNKSRSIN HIVRRPGTVN RFAGVGGGLL QWGQKERSKR KRTDEGGGGG ERRMKGARAV  240
AYEIRAFAEK TMVMEKKKME FAKETLKLRK DMEIKRLKLI QTSQAQLLQF LNTSFASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01428.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486618.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A078IQB41e-169A0A078IQB4_BRANA; BnaCnng21880D protein
STRINGBo7g031620.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-107Trihelix family protein