PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01418.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 302aa    MW: 34998.9 Da    PI: 6.9404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01418.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.42.9e-2820105184
                              EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W++++ ++ +s++yv+tkGW +Fvk+++L+ gD++ F+
  Rsa1.0_01418.1_g00008.1  20 FDKVLTPSDVGKLNRLVIPKHHAESYfplEDN-QNGTVLEFQDRNGKMWRFRYLFWSSSQSYVMTKGWIRFVKDKNLENGDTISFH 104
                              89**************************7444.46789***********************************************9 PP

                              E CS
                       B3  84 l 84 
                              +
  Rsa1.0_01418.1_g00008.1 105 R 105
                              4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3617112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-3018105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2718105No hitNo description
SMARTSM010196.9E-2220129IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05720129IPR003340B3 DNA binding domain
PfamPF023622.4E-2520108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASGSGNNNN FNLGMGEHMF DKVLTPSDVG KLNRLVIPKH HAESYFPLED NQNGTVLEFQ  60
DRNGKMWRFR YLFWSSSQSY VMTKGWIRFV KDKNLENGDT ISFHRGYVED ENEPEKRTKK  120
LFVDWRHRAD RNLVHNINHH HHYPLFMSPT YPSADYYPLS EYSMPHYRRF PPFYHNQLQE  180
RDFLGYGYGG PYYAGAPLDH NHHYQYGRSE PLVYNSYPVY PTTRVSSSAA MVPPPQEVTA  240
KKVRLFGVDV EESASSGEAR GEMGVAGYSS SSPFVIRDEE SSSIMQLSDD EEYKRKGKSI  300
DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-44171285113B3 domain-containing transcription factor NGA1
5os9_B8e-44171285113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01418.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455533.10.0PREDICTED: B3 domain-containing transcription factor NGA4
SwissprotO825951e-140NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A0D3DZU80.0A0A0D3DZU8_BRAOL; Uncharacterized protein
STRINGBo9g004050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-124B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]