PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01405.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34891.1 Da    PI: 6.0448
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01405.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18108160456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + +++ eq+++Le+ Fe  ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
  Rsa1.0_01405.1_g00007.1 108 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 160
                              4457889*********************************************9 PP
2HD-ZIP_I/II125.23e-40106198193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekk+rl+ eqvk+LE+sFe  +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy+aLk+++d+lk++n++L +++++
  Rsa1.0_01405.1_g00007.1 106 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDALKKQFDSLKSDNDSLLAHNKK 191
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L +e+++
  Rsa1.0_01405.1_g00007.1 192 LLAEVMS 198
                              *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-19101164IPR009057Homeodomain-like
SMARTSM003891.7E-17105166IPR001356Homeobox domain
PROSITE profilePS5007116.082106162IPR001356Homeobox domain
CDDcd000861.13E-16107163No hitNo description
PfamPF000462.7E-15108160IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-19110170IPR009057Homeodomain-like
PRINTSPR000313.4E-5133142IPR000047Helix-turn-helix motif
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PRINTSPR000313.4E-5142158IPR000047Helix-turn-helix motif
PfamPF021831.4E-16163202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGLWQLLVAL ATLLIGRYGS DLIWDDAAAG FRLEMAFPQH GFMFQQLHED ITPDQLPSCL  60
PPHPFNGGGN YMMNRSMSLT NVRDDPHQSV DEENLSDDGS HMMLGEKKKR LQLEQVKVLE  120
KSFELGNKLD PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDA LKKQFDSLKS  180
DNDSLLAHNK KLLAEVMSLK NKDCNEAIII KRETEASWSN NGSTENSSDI NLEIPRETTT  240
THVNTIKNLF PSSIPSSTHN HDHHQQNNEM VQEESFCNMF NGIDETTSAG YWGWSDPNHN  300
HQFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01405.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147412.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20
RefseqXP_013640328.10.0homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT01e-169ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A3P5ZN360.0A0A3P5ZN36_BRACM; Uncharacterized protein (Fragment)
STRINGBra039135.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-172homeobox protein 20