 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_01405.1_g00007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 304aa MW: 34891.1 Da PI: 6.0448 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01405.1_g00007.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.5 | 4.6e-18 | 108 | 160 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
Rsa1.0_01405.1_g00007.1 108 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 160
4457889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 125.2 | 3e-40 | 106 | 198 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekk+rl+ eqvk+LE+sFe +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy+aLk+++d+lk++n++L +++++
Rsa1.0_01405.1_g00007.1 106 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDALKKQFDSLKSDNDSLLAHNKK 191
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelke 93
L +e+++
Rsa1.0_01405.1_g00007.1 192 LLAEVMS 198
*999875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MGLWQLLVAL ATLLIGRYGS DLIWDDAAAG FRLEMAFPQH GFMFQQLHED ITPDQLPSCL 60
PPHPFNGGGN YMMNRSMSLT NVRDDPHQSV DEENLSDDGS HMMLGEKKKR LQLEQVKVLE 120
KSFELGNKLD PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDA LKKQFDSLKS 180
DNDSLLAHNK KLLAEVMSLK NKDCNEAIII KRETEASWSN NGSTENSSDI NLEIPRETTT 240
THVNTIKNLF PSSIPSSTHN HDHHQQNNEM VQEESFCNMF NGIDETTSAG YWGWSDPNHN 300
HQFN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. |
| GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. |
| GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |
