PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01388.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | DBB | ||||||||
Protein Properties | Length: 295aa MW: 31899.5 Da PI: 6.4975 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e+ C ++ lC C ++ H H++vpl Rsa1.0_01388.1_g00001.1 4 QCNVCEAAEAAVLCCADEAALCLACDEKVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 25.3 | 3.1e-08 | 54 | 90 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37 +kC+ ++e +fC +++ llC++C +++H H Rsa1.0_01388.1_g00001.1 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIH-TvnpH 90 689*******9********************9.33452 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.239 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.93E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 5.0E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.759 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.76E-8 | 55 | 99 | No hit | No description |
Pfam | PF00643 | 3.9E-6 | 55 | 89 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKIQCNVCEA AEAAVLCCAD EAALCLACDE KVHAANKLAG KHQRVPLSVS SSSIPKCDIC 60 QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIRVGLESTT DTSPSTKPSP 120 PSNDDKTSET KQVNLPISEP QKMDFGHHHQ VVLPGTNVSD HISTKLPFAS SGSAAGSIPQ 180 WQIEEIFRLT DFDQSYEYME INGSSKADTS KRGDSDSSSV IRSGEEDGED NSNCLGGGET 240 SWAVPQIPSP PTASGLNWPK HFNHHSAVFV PDISSSTPYT GSSPSQRVGK RRRRF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01388.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455868.1 | 0.0 | PREDICTED: B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 1e-164 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A3P6B837 | 0.0 | A0A3P6B837_BRACM; Uncharacterized protein | ||||
STRING | Bo6g122150.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5606 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-129 | light-regulated zinc finger protein 1 |