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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01368.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 742aa MW: 81459 Da PI: 5.5527 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL++ lgL+ q+k+WFqN+R+++k Rsa1.0_01368.1_g00003.1 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLGLEPLQIKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 220.4 | 5.7e-69 | 253 | 472 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela +a++elv++a+a++p+Wv e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + Rsa1.0_01368.1_g00003.1 253 ELAVAAMEELVRMAQAGDPLWVPTDnsmEILNEEEYFRTFPKGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSg 337 57899*****************988889**************999********************************.******** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgil 153 +a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++p + Ra+++pSg+l Rsa1.0_01368.1_g00003.1 338 ivsRALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPNP----ISRARRRPSGCL 419 *********************************************************************9....6*********** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 i++++ng+skvtwveh+++++r++h ++++lv+sgla+ga++wv+tl+rqce+ Rsa1.0_01368.1_g00003.1 420 IQELPNGYSKVTWVEHMEVDDRSVHTMYKPLVHSGLAFGARRWVSTLERQCER 472 ***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 43 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.55E-18 | 50 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-18 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.37E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.774 | 244 | 475 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-36 | 246 | 474 | No hit | No description |
CDD | cd08875 | 3.47E-127 | 248 | 471 | No hit | No description |
SMART | SM00234 | 7.4E-77 | 253 | 472 | IPR002913 | START domain |
Pfam | PF01852 | 6.5E-58 | 254 | 472 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-6 | 350 | 466 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.22E-25 | 492 | 730 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MYHPNMFEGH HMFDMTTKST SDNDFGITGS REDDFETKSG TEVTNENPSG EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLG LEPLQIKFWF QNKRTQMKAQ 120 HERHDNQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPIGSS FAPLAMNAPS RSLDLEVGNF GNQTCFIGEM YGTGDILRSV 240 SIPSESDKPM IIELAVAAME ELVRMAQAGD PLWVPTDNSM EILNEEEYFR TFPKGIGPKP 300 LGLRSEASRE SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL 360 QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL DSLRPNPISR ARRRPSGCLI 420 QELPNGYSKV TWVEHMEVDD RSVHTMYKPL VHSGLAFGAR RWVSTLERQC ERLASSMASN 480 IPASDLSVIT SPEGRKSMLK LAERMVMSFC SGVGASTAHA WTTMSSTGSD DVRVMTRKSM 540 DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRSEWD ILSNGGMVQE MAHIANGREP 600 GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP 660 SGFAILPDGS VGGGDGNQEV VASSTASESC GSLLTVAFQI LVDSVPTAKL SLGSVATVNS 720 LIKCTVERIK AAVACDRGGG GP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01368.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352868 | 0.0 | AK352868.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-J22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472664.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_018472665.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A3P6A9L9 | 0.0 | A0A3P6A9L9_BRACM; Uncharacterized protein | ||||
STRING | Bo3g048340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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