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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_01363.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 462aa MW: 51761.2 Da PI: 6.7419 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01363.1_g00003.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 156.3 | 1.3e-48 | 26 | 179 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............................kvkaeekew 58
l+pGfrFhPtd+elv++yLk+kv gk++++ ++i +vdiyk+ePwdL +k++++ew
Rsa1.0_01363.1_g00003.1 26 LAPGFRFHPTDDELVSYYLKRKVLGKPVRF-DAIGDVDIYKHEPWDLAVfwassklrlltqfwrkdmkfvdaslafsWLKTRDQEW 110
579************************999.99**************856899**************99999998886777999** PP
NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
yf++ dkky +g r nrat+ gyWkatgkd+e+ s + +l g+kktLvf++grap+g +t+Wvmheyrl
Rsa1.0_01363.1_g00003.1 111 YFYCALDKKYGNGARMNRATNLGYWKATGKDREIRS-DVQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 179
************************************.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 462 aa
Download sequence Send
to blast |
MGRESVTAVS SPPTATATAT AVATALAPGF RFHPTDDELV SYYLKRKVLG KPVRFDAIGD 60
VDIYKHEPWD LAVFWASSKL RLLTQFWRKD MKFVDASLAF SWLKTRDQEW YFYCALDKKY 120
GNGARMNRAT NLGYWKATGK DREIRSDVQL LGMKKTLVFH SGRAPDGLRT NWVMHEYRLV 180
DCETENNGNS VQDAYVLCRI FHKNNIGPPS GNRYAPFMEE EWAGDGVALI PGVNVSVKAE 240
PVPVANGNNH MDQEIQSASK DLININEPPR EPAPMDIELN HHENAVKPQE NNNNSNHCDE 300
GERPPAVCVL NKEAPLPLVQ YKRRRQNESS DNNNDSSRTP EDYCSSTTTT VDNTPTLISS 360
SPAAAAATNS AISALLEFSL MGISKKKENA QQTVRPHKEA TTLKEKLNDL QKEIEKMSDE 420
RKTFKLEMMG AEAMISILQS RIDALRQEND ELKKNSSAAN GH
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 1e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 1e-41 | 25 | 205 | 16 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 1e-41 | 25 | 205 | 16 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC966752 | 0.0 | KC966752.1 Brassica napus NAC transcription factor 50 (NAC50.1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
Plant J., 2011. 65(3): p. 492-502
[PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
Cell Discov, 2019.
[PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
Plant J., 2017. 90(3): p. 505-519
[PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression.
Plant Cell, 1998. 10(10): p. 1747-58
[PMID:9761800]
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