PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01359.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 261aa    MW: 29294.1 Da    PI: 7.1991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01359.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000151232323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C+ C+ksF++   L  H+r+H
  Rsa1.0_01359.1_g00002.1 12 CQVCKKSFPNGRALGGHMRSH 32
                             ********************9 PP
2zf-C2H212.70.00039235257123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ Cg++F +   L  H ++H
  Rsa1.0_01359.1_g00002.1 235 YKCELCGRVFESGQALGGHKKVH 257
                              9***********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.3E-91032IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5771037IPR007087Zinc finger, C2H2
SMARTSM003550.171032IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.46E-51134No hitNo description
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576676.47E-7192257No hitNo description
PfamPF139127.7E-11194218IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64194221IPR007087Zinc finger, C2H2
SMARTSM003550.19194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
PfamPF139127.8E-10234258IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24235257IPR007087Zinc finger, C2H2
SMARTSM003550.016235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMYSLLNETR NCQVCKKSFP NGRALGGHMR SHTRTLSASN GSTVPSLKIP TKLGENIRLN  60
ETVLMRSVHA SEVGRPEPDL KREEGGQQIT CKRKIVVDLD ECQSPLTAVE EAALVIVAMS  120
KGERPANSQN WNAIDRLLST PNEKEEYTRK SIDIDSDDDG RVLTEGIDEN EDGDEDEEDE  180
TYLVEKEKQC KKKFTCDICG KVLHSYQALG GHRTSHRTKR LKICDKNGQA MVRHYKCELC  240
GRVFESGQAL GGHKKVHYAF L
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01359.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479278.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLA0A3P6ETF41e-144A0A3P6ETF4_BRAOL; Uncharacterized protein
STRINGBo7g098740.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-63C2H2-like zinc finger protein