PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01300.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 413aa MW: 43619.9 Da PI: 8.9654

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01300.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.9e-38	93	152	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ Rsa1.0_01300.1_g00002.1 93 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 152 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	80	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	95	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MVFSSFPTYP DSSNWQQQHQ PITSTVGFTG DNNISQQFLP HHPLPPQPQQ TPPPLHLSGN 60 GGGGGGGPGG PGGSIRPGSM AERARIANIP MPETALKCPR CDSTNTKFCY FNNYSLTQPR 120 HFCKACRRYW TRGGALRSVP VGGGCRRNKR TKNSSGGGGS SSSGNSKSQD STTSNDQYHH 180 RAMDNNQMGP PPSSTSLSSL LSSYNAGLIP GHDHNMSSNN HVLGLGSSLP PLKLMPPLDF 240 TDNFTLQYGT VSAPSYHVGG GSSGGGGAAS LLTGFDQWRF PAPHHQLPLL GGLDSSSSSS 300 GLYPFDHQNQ TGLEPQNPGY GLITGSGQYR AKNIFHNLVS SSVSSAMVTA TASQLASVKM 360 EDSNNQLNMS RQLFGTEQQL WNIHGTAAST AAATTSSWSD VSNNFSSSST SNI

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MVFSSFPTYP DSSNWQQQHQ PITSTVGFTG DNNISQQFLP HHPLPPQPQQ TPPPLHLSGN  60
GGGGGGGPGG PGGSIRPGSM AERARIANIP MPETALKCPR CDSTNTKFCY FNNYSLTQPR  120
HFCKACRRYW TRGGALRSVP VGGGCRRNKR TKNSSGGGGS SSSGNSKSQD STTSNDQYHH  180
RAMDNNQMGP PPSSTSLSSL LSSYNAGLIP GHDHNMSSNN HVLGLGSSLP PLKLMPPLDF  240
TDNFTLQYGT VSAPSYHVGG GSSGGGGAAS LLTGFDQWRF PAPHHQLPLL GGLDSSSSSS  300
GLYPFDHQNQ TGLEPQNPGY GLITGSGQYR AKNIFHNLVS SSVSSAMVTA TASQLASVKM  360
EDSNNQLNMS RQLFGTEQQL WNIHGTAAST AAATTSSWSD VSNNFSSSST SNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01300.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241023	0.0	AC241023.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039N20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473035.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-162	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A078J0Z8	0.0	A0A078J0Z8_BRANA; BnaA03g54830D protein
STRING	Bo3g001890.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-131	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]