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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01251.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 305aa MW: 34561.1 Da PI: 7.5341 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01251.1_g00003.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 38.4 | 3.1e-12 | 49 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s ++GV++++++gr++A+++d s+n ++k+ + g ++ +e Aa+a++ a++k++g
Rsa1.0_01251.1_g00003.1 49 SSHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEEAAARAYDLAALKYWG 105
579******************88889998888888********************98 PP
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2 | AP2 | 54 | 4.1e-17 | 148 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g
Rsa1.0_01251.1_g00003.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 199
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process |
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process |
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MAKLSQRNKK IIEDETIDNT AIASASSVVF KCKRKRKSPP QNAPPQRSSS HRGVTRHRWT 60 GRYEAHLWDK NSWNETQTKK GRQGAYDEEE AAARAYDLAA LKYWGRDTLL NFPLSTYEED 120 IKEMEGNSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAARAY DIAAIEYRGL NAVTNFDVSR YLDLPASKKP NAAASPDSPN DQTSSDDNAC 240 TKTEEMTEPS TPPEAIQSRR SFPDDIQTYF ECQDSGKLAT EEDVVFGGFN SFISPGLCNE 300 FDYWS
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK352786 | 0.0 | AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17. |