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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_01237.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
bHLH |
| Protein Properties |
Length: 342aa MW: 37043.9 Da PI: 6.7017 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01237.1_g00003.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 51 | 2.6e-16 | 172 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq
Rsa1.0_01237.1_g00003.1 172 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 218
6*************************7.....5******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MADKKLISSA SSSSTSIYDP RGNNNHQPPS SSDEISQFLR HIFDRSSPLP SHYSPAYTAA 60
TGGDPHADNN TTRCFVSPPS SKRAAAAEFS DVPLGSATAV PCYGFSGGNN NNNAAQGSSS 120
GTRVSSSSLG ASGNETDCEY DCESEEGVEA VVDDEHPSKS RSSSKRCRAA EVHNLSEKRR 180
RSRINEKMKA LQSLIPNSNK TDKASMLDEA IEYLKQLQLQ VQMLTMRNGI NLHPLSLPGT 240
SLHPLQLSQI RPPETTTDPL LNQFASTSNA PDMLNMPSAY TLEPSIRSHF GRFLPFTPPV 300
EMNREGGLTH QRLNIGGHPN ANLTGEHAAF DGQHPEIKDR LT
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF921090 | 1e-146 | KF921090.1 Brassica oleracea var. capitata bHLH transcription factor SPT mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Moubayidin L,Ostergaard L
Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development.
Curr. Biol., 2014. 24(22): p. 2743-8
[PMID:25455035] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
Evodevo, 2017. 8: p. 5
[PMID:28331573] - Reyes-Olalde JI, et al.
The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium.
PLoS Genet., 2017. 13(4): p. e1006726
[PMID:28388635] - Wu M, et al.
SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis.
Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385
[PMID:29966653]
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