PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01221.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 183aa    MW: 20432.8 Da    PI: 6.3949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01221.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-182171155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Rsa1.0_01221.1_g00002.1 21 SVYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                             78*****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-222180IPR016177DNA-binding domain
CDDcd000182.47E-322180No hitNo description
PfamPF008471.9E-112171IPR001471AP2/ERF domain
SMARTSM003803.7E-372285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-322280IPR001471AP2/ERF domain
PROSITE profilePS5103223.6172279IPR001471AP2/ERF domain
PRINTSPR003671.0E-122334IPR001471AP2/ERF domain
PRINTSPR003671.0E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASLSHSSNN ERHDGQAGIP SVYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GREARLNFPE FVSSLPRPAD SSSDSIRMAA HEAVLCLRTE PVESAMHVDT  120
SSSSNAGPTM VRLSPREIQA INESTLGSPT MLMHSTDDYS MGFANYMGMN VWDTYHTDSL  180
WDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172384668ATERF1
3gcc_A1e-172384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01221.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454637.11e-135PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-99ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3CZV41e-123A0A0D3CZV4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BKD61e-123A0A3P6BKD6_BRACM; Uncharacterized protein
TrEMBLA0A3P6HDX31e-123A0A3P6HDX3_BRAOL; Uncharacterized protein
TrEMBLM4DI091e-123M4DI09_BRARP; Uncharacterized protein
STRINGBra016136.1-P1e-124(Brassica rapa)
STRINGBo6g113020.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-102ERF family protein