PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01199.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 236aa    MW: 27443.2 Da    PI: 6.3145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01199.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-1185134155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+r h + Er RR++ ++++  L +llP a     +K++K++i+ekAv+ I++L+
  Rsa1.0_01199.1_g00005.1  85 RCRRHMIQERTRRENQKQSYLALHSLLPFA-----TKNDKISIVEKAVDQIRKLE 134
                              67889*************************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1279148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-1082135No hitNo description
PROSITE profilePS5088813.57384133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-885134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-988158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-590139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDNFFLDSIW QEEDIFWDLI AGDVSGNADN TVSVLNRSAF KSFARNTEQT MVSCSSSVNV  60
NKRMLNLLRK NWEEKKNALA PEKERCRRHM IQERTRRENQ KQSYLALHSL LPFATKNDKI  120
SIVEKAVDQI RKLEEYKKEL ERRMNALEAK STEIRFSLQE PLSGMDSMVE SLQCLKSMGT  180
KLKTVQANFS PHEFSATMNI ETQIQGEEVE EIVERRLQET ERKLLFLPGA SIFEDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01199.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455115.11e-158PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-111BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A078H6711e-130A0A078H671_BRANA; BnaA09g16560D protein
STRINGBra027501.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.17e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]