PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01195.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 310aa    MW: 34970.2 Da    PI: 7.9739
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01195.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.32.4e-3131136199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Rsa1.0_01195.1_g00012.1  31 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSF 116
                              99****************************66677899************************************************ PP

                              EE-..SS.SEE..EEEEE-S CS
                       B3  83 kld..gr.sefelvvkvfrk 99 
                               +   ++ ++ +l++ ++r+
  Rsa1.0_01195.1_g00012.1 117 LRCvgDTgRDSRLFIDWRRR 136
                              94332335677788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-4126138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-3028121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-2529116No hitNo description
PfamPF023621.0E-2831136IPR003340B3 DNA binding domain
SMARTSM010194.8E-2331137IPR003340B3 DNA binding domain
PROSITE profilePS5086314.35331137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMTNLSLARE GEEEEAEEKK LIEEVEREHM FEKVVTPSDV GKLNRLVIPK QHAEKYFPLD  60
SSSNEKGLLL NFEDLTGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDTVSFLRCV  120
GDTGRDSRLF IDWRRRPKVP DYPTSTSHFA AGAMLPRFYS FPTATTSTSY NLYNHQQPRY  180
QHSGYCYPRI PREFGYGYVV RSVDQRSVVA DPLVIESVPV MMHGGARVNQ AQAAVGTAGK  240
RLRLFGVDME CGESGVTNST EEESSSSCGS LSRGGASPSS SLFQLRLGNS SEDDHFFKKG  300
KSSLPFNLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-75251392116B3 domain-containing transcription factor NGA1
5os9_B5e-75251392116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01195.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734875.10.0B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-158NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A078IPA90.0A0A078IPA9_BRANA; BnaC03g72370D protein
STRINGBo3g039420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-143B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]