PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01195.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 356aa MW: 39168.1 Da PI: 8.4854

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01195.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.7e-38	63	123	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg+++knk+ s Rsa1.0_01195.1_g00006.1 63 PHEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSKKNKRPS 123 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	62	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	65	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009416	Biological Process	response to light stimulus
GO:0009845	Biological Process	seed germination
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MMHVKPMEQI MIPNNNTHQS NATPDARPNT ILTSNGVSAA GATVSGVSNN NNTAVVVERK 60 ARPHEKVNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV PVGGSSKKNK 120 RPSSSSSNIL QTTPSSLGLS TTLPDLNPPI LFSNQIPNKS KESSQDLNLL SFPVMQDQHH 180 HHHRGQMSQF LQMPKMEGNG NITHQQPSSL YGSSSSPVSA LELLRTGANV SSRSGINSFM 240 PSGPMLDSSN NMLYTSSGFP TMVDYKPSNL SFSTDHHQGM GHNTSRSDDH NDHHQGRILF 300 PFGDQMKELT SSITQEVDHD DNQQQKSHGD NNNNSSSPNT GYWSGMFTNT GEGSSW

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MMHVKPMEQI MIPNNNTHQS NATPDARPNT ILTSNGVSAA GATVSGVSNN NNTAVVVERK  60
ARPHEKVNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV PVGGSSKKNK  120
RPSSSSSNIL QTTPSSLGLS TTLPDLNPPI LFSNQIPNKS KESSQDLNLL SFPVMQDQHH  180
HHHRGQMSQF LQMPKMEGNG NITHQQPSSL YGSSSSPVSA LELLRTGANV SSRSGINSFM  240
PSGPMLDSSN NMLYTSSGFP TMVDYKPSNL SFSTDHHQGM GHNTSRSDDH NDHHQGRILF  300
PFGDQMKELT SSITQEVDHD DNQQQKSHGD NNNNSSSPNT GYWSGMFTNT GEGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00319	DAP	Transfer from AT2G46590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01195.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232491	0.0	AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
GenBank	AC241033	0.0	AC241033.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472770.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
Refseq	XP_018472771.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3B710	0.0	A0A0D3B710_BRAOL; Uncharacterized protein
STRING	Bo3g039340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-176	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]