PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01192.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 37087.7 Da PI: 4.749 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G g+W++ +r+ g+ Rt+k+c++rw++yl Rsa1.0_01192.1_g00001.1 21 RGPWTAEEDFKLMNYIATHGEGRWNSLSRCAGLQRTGKSCRLRWLNYL 68 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Rsa1.0_01192.1_g00001.1 74 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.363 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-31 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.42E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.36E-7 | 94 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDEKGRNLNN NNMEDEMDLK RGPWTAEEDF KLMNYIATHG EGRWNSLSRC AGLQRTGKSC 60 RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120 KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IHSASAAATV ATTTNTTTTT GSAATSSSNT 180 TSNNQFMTYD YNNNSLGQQF GVVNNEYSTP ENSNVAVSPM SDLTEYYSAP NPYPEYYSGQ 240 VGNSYHPDQD LVVPQMLPDN YYDYSGLLDE DLPGMQEQSN LNWFEDFNGV TSSSDSLWNI 300 GESNEDLWFL QAQQQFNNNG NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 18 | 115 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01192.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489043.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9LDE1 | 1e-177 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | A0A0D3CMB3 | 0.0 | A0A0D3CMB3_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g143460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 1e-155 | myb domain protein 108 |
Publications ? help Back to Top | |||
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