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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01181.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
G2-like |
Protein Properties |
Length: 400aa MW: 45405.4 Da PI: 9.0579 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01181.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 101.9 | 4.1e-32 | 227 | 280 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
Rsa1.0_01181.1_g00002.1 227 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 280
9****************************************************7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MELFPAQPDL SLQISPPNSK PSSTWQKRRS TTDQGEHGEL DLGFWRRALD SRTSLVCNPS 60 SRTTSNNHHP LGDLSLSNNS HQHQHQHQHQ HQHQKQQHQH PHLLPNCNGS NILTSFQFQT 120 QQQQQGFLAH DLNTHLRPIR GIPLYQNPQP HHHHRPPPPY FPFDPSSLIP SSLLTPTAIN 180 NSFGTSSVSN SGLITNPNYH NHQHHRQTLN RDRFMPRFPA KRSMRAPRMR WTTTLHARFV 240 HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDKAASS GQSDVYENGS 300 SGDNNSDDWM FDMNRKSRDS DELMNPLEKS NGLWTNSSGE ARLHGKVIDN VAELMLPSEK 360 EIDGKFSSYE RIPSEEMSLS SISGTSPVKP NLEFTLGRSH
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4k_A | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-16 | 228 | 282 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY048689 | 0.0 | AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds. |
GenBank | BT029211 | 0.0 | BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds. |