PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01180.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 26352.1 Da PI: 10.3243 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.8 | 1.4e-29 | 52 | 106 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++YkeC+kNhAa +Ggh+vDGC+Efmp geegt+ alkCaAC+CHR+FHR+ev Rsa1.0_01180.1_g00002.1 52 AAKYKECQKNHAALTGGHVVDGCCEFMPG-GEEGTQGALKCAACNCHRSFHRKEVY 106 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-27 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-26 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.415 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 155 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.81E-18 | 155 | 225 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.345 | 162 | 226 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 8.0E-25 | 164 | 221 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEHGGSCNAI TTTTITLKAK PHSNPDPKDK PVSDPFLIKK ENQKPTTRGD QAAKYKECQK 60 NHAALTGGHV VDGCCEFMPG GEEGTQGALK CAACNCHRSF HRKEVYGHRN RTREELISTV 120 VYKAIQPRGV YPTSEIGRRA SSSSEDMKKI LNQNTDGKDS MRKKKRVRTK ISEEQKKKMK 180 EFAERLGWSM QKKDEEEIDK FCRTVNLRRQ VFKVWMHNNK QAMKRNGNLN L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-17 | 165 | 227 | 18 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 177 | KKRVRTKISEEQKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01180.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189189 | 1e-137 | AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480792.1 | 1e-175 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Refseq | XP_018480793.1 | 1e-175 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Refseq | XP_018480794.1 | 1e-175 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q9SVL0 | 1e-116 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A398A4T8 | 1e-146 | A0A398A4T8_BRACM; Uncharacterized protein | ||||
STRING | Bo7g100590.1 | 1e-147 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13854 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 1e-112 | homeobox protein 28 |