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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01167.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26492.9 Da PI: 6.9133 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 59 | 107 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + hn++Er+RR++ Ns f++Lr++lP + ++ ls + + ++YI +L Rsa1.0_01167.1_g00005.1 59 KLIHNANERNRRKKTNSLFSTLRSCLPGS----DENLSNPRTISRSMQYIPEL 107 667*************************9....899**************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-13 | 48 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.639 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.53E-9 | 58 | 112 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 58 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 59 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-9 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRPLGPMFPN FGWVSTEEYE RDNLVEDNHS NCTSPDSSLG VSESSEGNGI NNNSAVIRKL 60 IHNANERNRR KKTNSLFSTL RSCLPGSDEN LSNPRTISRS MQYIPELKEQ VKKLTQKKED 120 LLVRILGQRG SYVMPQPKVA SSYVSTVFAT ELTDTEVLIQ ISSSKNHNFS IYNVLSGLEE 180 DGFVLVDVSS SSCWGERLFY TLHLQVDKVD NYKLICEDLS RRVLFLFEKC GKLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01167.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102594.1 | 1e-122 | PREDICTED: transcription factor ORG3-like | ||||
Swissprot | Q9M1K1 | 8e-91 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A0A078JU88 | 1e-124 | A0A078JU88_BRANA; BnaUnng04210D protein | ||||
STRING | Bra014970.1-P | 1e-121 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-85 | bHLH family protein |