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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01164.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 56231.6 Da PI: 9.1575 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rsa1.0_01164.1_g00010.1 96 FVCEICNKGFQRDQNLQLHKRGH 118 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.87E-6 | 95 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-6 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.4E-5 | 96 | 118 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.907 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 138 | 168 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.87E-6 | 168 | 193 | No hit | No description |
SMART | SM00355 | 180 | 173 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MMSKDILLHQ QVQQQQQENM SNLTSASGDQ TSVSSGNRTE ASGSNYFPHH QQQEQQQFFV 60 PESQPQKKRR NQPGNPDPES EVISLSPKTL MATNRFVCEI CNKGFQRDQN LQLHKRGHNL 120 PWKLKQRPNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFFRKHGE KKWKCDKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTIFSR RDSFITHRAF CEALGKETAR EVVIPENYNH 240 QPNPILISQS TFHHQHDQAQ PNMNVSSPSH NIINNLHFKT NNNGTNNSNS SSNHLSTFPV 300 KKEQQQSSDH IISYHHQSIP PWLAPQPQDL TFSNRNPSNG GGGLFSLAAS PAMSATALLQ 360 KAAQMGSTRS PRLPPTTDFE RSAHHNNLMT TTMAAMMTSP SGFISSNNNN QVMFQGYNPS 420 VFDHHGGEEA FDDTFSAFLR TPADTTTAGS DKKKSGGGGG VGEGLTRDFL GLRPLMSHNE 480 MLSFAGLGNC ISGAASDQLH PKPWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-30 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-30 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 135 | KLKQRPNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01164.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018493474.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493475.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493476.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493477.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A1J3FCK1 | 0.0 | A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment) | ||||
STRING | Bo1g134920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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