PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01157.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 386aa MW: 42540.4 Da PI: 6.7598

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01157.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.7e-07	191	217	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Rsa1.0_01157.1_g00008.1 191 SHSLAERARREKINARMKLLQELVPGC 217 8************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-12	185	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-5	185	279	No hit	No description
PROSITE profile	PS50888	12.906	187	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	191	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-5	191	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-6	193	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-12	253	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	253	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDLSRRFGAG SGGGVPFREA AALESLHLGG GDEFPQMVPP ENGGGFTALL ELPPTQAVEL 60 LHSSSSSSSQ ATSLHTLGAL AFPSNSVLME RAARFSVIAT EQQNQNGNVS GETPTTTTTS 120 SVPSNEHIKT EPAETETSDQ AAVEKQNNRC GKRKDFDKKA KGSSKKNKSS EENEKLPYVH 180 VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCDKG TYFGGKIKDQ RSKYVLWGPS 240 NWKLSMEAHK KVSDLQIQGT ALVLDEIINH VQSLQRQVEM LSMRLASVNP RIDFNLDTIL 300 SSENGSLMDG NFNGAAMQLA WPHQVMETEQ SYHHRQLQQP PPQQWPFDAL NQPVWGREED 360 QDHGNDHNSL MVGSASLHPN QVKMEL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDLSRRFGAG SGGGVPFREA AALESLHLGG GDEFPQMVPP ENGGGFTALL ELPPTQAVEL  60
LHSSSSSSSQ ATSLHTLGAL AFPSNSVLME RAARFSVIAT EQQNQNGNVS GETPTTTTTS  120
SVPSNEHIKT EPAETETSDQ AAVEKQNNRC GKRKDFDKKA KGSSKKNKSS EENEKLPYVH  180
VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCDKG TYFGGKIKDQ RSKYVLWGPS  240
NWKLSMEAHK KVSDLQIQGT ALVLDEIINH VQSLQRQVEM LSMRLASVNP RIDFNLDTIL  300
SSENGSLMDG NFNGAAMQLA WPHQVMETEQ SYHHRQLQQP PPQQWPFDAL NQPVWGREED  360
QDHGNDHNSL MVGSASLHPN QVKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01157.1_g00008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189469	1e-150	AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139008.1	0.0	PREDICTED: transcription factor bHLH60-like isoform X1
Swissprot	Q3EAI1	0.0	BH060_ARATH; Transcription factor bHLH60
TrEMBL	M4DDN5	0.0	M4DDN5_BRARP; Uncharacterized protein
STRING	Bra014603.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.1	1e-155	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]