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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01155.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32542 Da PI: 9.6402 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I r R+ ++k++w+++ Rsa1.0_01155.1_g00006.1 5 KLKWTEEEEEALLAGVRKHGPGKWKNILRDAEfagqlSQRSNIDLKDKWRNL 56 689**********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.18 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 3 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.85E-12 | 7 | 56 | No hit | No description |
SMART | SM00526 | 3.0E-15 | 121 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 4.4E-11 | 122 | 198 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.59E-14 | 122 | 202 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.313 | 123 | 199 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.9E-11 | 125 | 197 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGNQKLKWTE EEEEALLAGV RKHGPGKWKN ILRDAEFAGQ LSQRSNIDLK DKWRNLSVAP 60 DIQGSKDKVR TPKIKAAAFQ LAAVAAASSP SPSSSHSPVP PLPRSVSDLS IDDSVNFTVD 120 AKNAPRYDGM IFEALSSLTD ANGSDVTAIF NFIVQKGHEV PPNFKRILGS RLRRLASQGK 180 LEKVSQLKSG TQNFYKMNGH SFMAMRTPLA ARPKEVNVKP RQANSQGPTV SQEKFDHAAG 240 TAAFKFVEVD EKLETLNAAV EERDRMIELA EQAELILLLA EELHKECSQG KIVALN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01155.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172887 | 1e-111 | AC172887.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004B22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450895.1 | 0.0 | PREDICTED: telomere repeat-binding factor 4-like isoform X1 | ||||
Swissprot | F4I7L1 | 1e-127 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A3P6BYT7 | 1e-180 | A0A3P6BYT7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DJC0 | 1e-180 | M4DJC0_BRARP; Uncharacterized protein | ||||
STRING | Bra016598.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-110 | MYB_related family protein |
Publications ? help Back to Top | |||
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