PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 339aa MW: 38689.1 Da PI: 8.5402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01151.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Rsa1.0_01151.1_g00002.1 182 FACSICSKTFTRYNNMQMHM 201 78*****************9 PP
2	zf-C2H2	10.9	0.0014	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ Rsa1.0_01151.1_g00002.1 267 FSCGKCGKALAVKGDWRTHEKNC 289 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.29E-9	161	205	No hit	No description
SMART	SM00355	0.17	182	204	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.596	182	209	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.8E-6	182	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	230	262	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.38E-5	252	287	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.9E-4	253	287	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	190	267	287	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	180	293	316	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MNLHEKGLTF KSSGFLAWLR ASSNSSSPSV LFPMKMKDVV SRSYHQSQMN ILERSLFLYQ 60 PQEPLNTNTT SIQCLPLLNK LMEDESQASD DIKEEIDDDV VTLQIGLPTY HRGNSVEDDS 120 DTTSEHHQKK SIKRERIEDG VVMMKKRIKM TFEQKMIDDM EVCGKRFWIP SPAQIHVGPM 180 QFACSICSKT FTRYNNMQMH MWGHGSEFRK GADSLKGTTQ PAAILRLPCY CCAEGCKNNI 240 NHPRAKPLKD FRTLQTHYKR KHGSKPFSCG KCGKALAVKG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IKSFGHGHSP HPSLSFDGFE EDTECVTTE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01151.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254448	0.0	AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBank	AK118851	0.0	AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBank	AY090918	0.0	AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432797.1	0.0	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	0.0	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	M4ES43	0.0	M4ES43_BRARP; Uncharacterized protein
STRING	Bra031621.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	0.0	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]