PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01149.1_g00019.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 289aa    MW: 31880 Da    PI: 9.081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01149.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017164186123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F ++  L  H  +H
  Rsa1.0_01149.1_g00019.1 164 FECGGCKKVFGSHQALGGHRASH 186
                              89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.61978105IPR007087Zinc finger, C2H2
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-878102IPR007087Zinc finger, C2H2
SuperFamilySSF576674.42E-779100No hitNo description
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-480100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.42E-7159186No hitNo description
PfamPF139121.1E-7163187IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66164191IPR007087Zinc finger, C2H2
SMARTSM003553164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-5226253No hitNo description
PROSITE profilePS501579.702227254IPR007087Zinc finger, C2H2
SMARTSM003550.14227249IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-11227251IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MATNNSDSDP SFHTPLTPTS NAIIPIYPNP NLQLALSPSY NQSPRKKRKT VALPSSSSPK  60
PKPKYPRKPD PNAPKITRPC TECGKRFWSW KALFGHMRCH PERQWRGINP PPNHRGPTPA  120
SFSNQNQRSP KWVSLMTEED HEVASYLLML ANSTPSSSSC GERFECGGCK KVFGSHQALG  180
GHRASHKNVK GCFAITNVAD DHMTVTTTTT PSDQDHQGKI VTYLGQHKCN VCFRVFSSGQ  240
ALGGHMRCHW EKQEETMVCG AFDLNVPATT HDLSTSDTPG CSLDLRLGL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01149.1_g00019.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482399.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-145ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3P6F9E70.0A0A3P6F9E7_BRAOL; Uncharacterized protein
STRINGBo7g117320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-138C2H2-like zinc finger protein