PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01143.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29882 Da    PI: 9.689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01143.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.9e-31959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss
  Rsa1.0_01143.1_g00007.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVSLIVFSHKGKLFEYSS 59
                             79***********************************************96 PP

2K-box104.41.4e-34841768100
                    K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                              + + +   +++ e+++Lk++ie L+r+qRh+lGedLes+s+keLq+LeqqL++slk+iRs+Kn+l++e++++lq+keke+qeen +
  Rsa1.0_01143.1_g00007.1  84 DSHVNAKTNWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEIQEENSM 169
                              36677789****************************************************************************** PP

                    K-box  94 Lrkklee 100
                              L k+++e
  Rsa1.0_01143.1_g00007.1 170 LAKQIKE 176
                              ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.48E-41279No hitNo description
SuperFamilySSF554552.88E-34286IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-3085174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.05490180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVSLIVFSH KGKLFEYSSE  60
SCMEKVLERY ERYSYAEKQL KAPDSHVNAK TNWSMEYSRL KAKIELLERN QRHYLGEDLE  120
SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEIQEENSML AKQIKERESI  180
LRTHQNQSDQ QNRSHHVPPQ PQPQLHPYMI SHQASPFLNM GGLYQREDPT AVRRNSLDLT  240
LNPIYNCNLG YFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21174173MEF2 CHIMERA
6byy_B1e-21174173MEF2 CHIMERA
6byy_C1e-21174173MEF2 CHIMERA
6byy_D1e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01143.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5140450.0AY514045.1 Brassica rapa var. communis DNA binding protein (CAL) mRNA, complete cds.
GenBankAY5140480.0AY514048.1 Brassica rapa subsp. rapa DNA binding protein (CAL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449537.10.0PREDICTED: transcription factor CAULIFLOWER isoform X1
RefseqXP_018451392.10.0PREDICTED: transcription factor CAULIFLOWER isoform X1
SwissprotQ6R4S30.0CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S60.0CAL_BRARC; Transcription factor CAULIFLOWER
TrEMBLA0A397YL701e-179A0A397YL70_BRACM; Uncharacterized protein
TrEMBLM4D3G71e-179M4D3G7_BRARP; Uncharacterized protein
STRINGBra011021.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-149MIKC_MADS family protein