PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01134.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 254aa    MW: 28501.6 Da    PI: 4.5896
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01134.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-181299194
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                             ffkv+ ++ +++   + +p +f e+ + +   +++ +l+ + g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg++
  Rsa1.0_01134.1_g00008.1 12 FFKVFFSETASE--SMGIPMSFNEHLEDP--LPQKAKLQGTGGGVWTVSF--TKIRDCAYFTSGWSKFAEEHELKDGEFLTFVYDGHH 93
                             788885544444..48******9655655..8889***************..99988899*************************999 PP

                             EE..EE CS
                       B3 89 efelvv 94
                             +fe  v
  Rsa1.0_01134.1_g00008.1 94 TFEVSV 99
                             995544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-229105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.74610103IPR003340B3 DNA binding domain
CDDcd100172.52E-1710100No hitNo description
Gene3DG3DSA:2.40.330.106.3E-2110102IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-151299IPR003340B3 DNA binding domain
SMARTSM010191.1E-1912103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-6158241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-8159238IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.84163251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDENEDDVLP RFFKVFFSET ASESMGIPMS FNEHLEDPLP QKAKLQGTGG GVWTVSFTKI  60
RDCAYFTSGW SKFAEEHELK DGEFLTFVYD GHHTFEVSVY GHCGCKETRA VVETVEVSDD  120
DSDGSEEEED SSADDDSDVS SNVTVSDDDA GLSSMEVTGN PCFTTKLKQR IYELLIPANV  180
VNEHGLTFGD SIKYIDAEGV MKGERGKMPD GRVCFKGWNR VCRRNRVREQ DTVHCEMLHV  240
RKKVHSIKVT VTRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-191110510104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01134.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-115AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489310.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV59e-90REM20_ARATH; B3 domain-containing protein REM20
TrEMBLM4CRZ71e-137M4CRZ7_BRARP; Uncharacterized protein
STRINGBra006989.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-44B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]