PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 370aa MW: 40495 Da PI: 8.2283

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01123.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.3e-32	223	278	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ Rsa1.0_01123.1_g00007.1 223 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 278 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.08E-17	220	281	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.038	220	280	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-28	221	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	223	278	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	225	276	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0055062	Biological Process	phosphate ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDAQKMQRCH EYVEALEEEQ KKIQVFQREL PLCLELVTQA IEACRKELSS TSTTSEQCSE 60 QTTSVSGGPV LEEFIPTKKT EENGEHESPT PPEENVKRSD WLRSVQLWNP SPDTNTNTNE 120 VSNPERVVGK KAKVVEVKPN NSNCGGFQPF QREKKRVFSE SNDPQPAAVK AVDSAPAVKA 180 VASAPAPATT TSSTTETCGV VGKGGEEHIH QQQSQTQSQT RRKQRRCWSP ELHRRFLHAL 240 QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPAASMTPQG NGNSQQPQFV 300 VVGGIWVPSP QDVPPPSDVA NNSGGIYAPV TLRPPPSPQS PKRSVERSSG QCNSQAASSS 360 TNTATSSPVS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDAQKMQRCH EYVEALEEEQ KKIQVFQREL PLCLELVTQA IEACRKELSS TSTTSEQCSE  60
QTTSVSGGPV LEEFIPTKKT EENGEHESPT PPEENVKRSD WLRSVQLWNP SPDTNTNTNE  120
VSNPERVVGK KAKVVEVKPN NSNCGGFQPF QREKKRVFSE SNDPQPAAVK AVDSAPAVKA  180
VASAPAPATT TSSTTETCGV VGKGGEEHIH QQQSQTQSQT RRKQRRCWSP ELHRRFLHAL  240
QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPAASMTPQG NGNSQQPQFV  300
VVGGIWVPSP QDVPPPSDVA NNSGGIYAPV TLRPPPSPQS PKRSVERSSG QCNSQAASSS  360
TNTATSSPVS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269\|PubMed:27016098}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00218	DAP	Transfer from AT1G68670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01123.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269\|PubMed:27016098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443801.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q8VZS3	1e-147	HHO2_ARATH; Transcription factor HHO2
TrEMBL	A0A3P6CU61	0.0	A0A3P6CU61_BRAOL; Uncharacterized protein
STRING	Bra038360.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	5e-96	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098] Sun X, et al. The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides. J. Exp. Bot., 2018. 69(7): p. 1749-1764 [PMID:29385617]