PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01122.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 1022aa    MW: 113978 Da    PI: 7.8896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01122.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.4e-27882939259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+W+KYGqK++kg++++rsYY+Ct++gC+vkk+ver +++ k +++ Y g+H h+
  Rsa1.0_01122.1_g00008.1 882 DDGYSWKKYGQKVIKGNPNARSYYKCTFSGCKVKKHVERRSDNMKSLVTSYFGNHVHH 939
                              8*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566721.29E-1063345No hitNo description
PROSITE profilePS508788.89695365IPR000477Reverse transcriptase domain
CDDcd016508.57E-47113376No hitNo description
PfamPF000788.4E-32115357IPR000477Reverse transcriptase domain
PfamPF134561.1E-5649688No hitNo description
Gene3DG3DSA:2.20.25.809.1E-28868941IPR003657WRKY domain
PROSITE profilePS5081128.874876941IPR003657WRKY domain
SuperFamilySSF1182901.83E-23877941IPR003657WRKY domain
SMARTSM007744.1E-31881940IPR003657WRKY domain
PfamPF031064.4E-21882939IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MVYKEEEIVQ IIRDYFESMF SSSPGNSATT INSALSPIIT EEDIAILTSI PTALEIRVAA  60
FSIHADKATG PDGLSAGFFH THWDKIGPDI VNAVQGFFNG APLHMVLMTH IQLIPKITNP  120
QKISNYHPIA LCNVYYKIYS KLLTRRLQPS MDKLISENQS AFVHGRAIGD NILITHEVLH  180
YLKISKAEQQ CAIAVKTDMS NAYDQLEWDF ITLVLARLGF HRRLISLIIQ CISSVTYSFL  240
SNGLPRGKVV PSRRIRQGDP LPPYIFIMCS EVLYGLCNIV QEEELIQGVK VARGCPRINH  300
LLFADDTIFF LDANESSCEA LTALWNSYEE ALGQSINTEK SAITFSKRMS TAQKDSIKNF  360
LSIQKEGGVG KYMGLPEHVG RRETGDAAKR LVGDPLLPHV ILQNATKPKA AGGLGLRDFQ  420
KFNDALLAKI GWRLLHNLNC LLGKVLKGNY FADTNILLAA ESSSMSHGWR SVLAGRDLLL  480
KNLVIAMEKD DNDNTAYMEF NWRKNFGTWN ASLTLICSLG SFRGALPVGE RLIECHIAAD  540
LKCKSRMIDL MAVWPSLCSQ KCLPPSGILS GSLVPWIMWT LWKARNSQSE THDCKGSRML  600
ELPEMQEELV MRTMLHAWDG SSYLAQVTGI FTFYSAQLIK CLNAGGNIAE ICSVVSNILS  660
LVADFEYVSF GWISRERNMI ADNLAKDALN VIELVVFPTK MRSSDENFME MTSYSASKAS  720
PSPRMTSVRI DQPENALKQM SRILPQTYLS LDYQSEQRSG HLGHRLTAKV SPPALLQSPF  780
SNSSSQIVSP SPVAIFGLPE KMESFGSDHA TMMISNNGLP HQRMDVDQAP EDHTIVDVLN  840
VEPSYPKRRE DEVSNMIGAT RPGSNHETVI IIQMEREENN PDDGYSWKKY GQKVIKGNPN  900
ARSYYKCTFS GCKVKKHVER RSDNMKSLVT SYFGNHVHHA PIQRRKSYLL KNRSSSSMSQ  960
DPSNRTSRLG RPPSCSSASQ VFSPSLEPHL DMTQIYMTGL SLSLPGNQND EPKIDRAIPD  1020
GT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-22872941877Probable WRKY transcription factor 4
2lex_A8e-22872941877Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01122.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931431e-161KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.14e-39WRKY DNA-binding protein 10