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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01119.1_g00015.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 226aa MW: 25980.6 Da PI: 9.9939 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01119.1_g00015.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97 | 8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
Rsa1.0_01119.1_g00015.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 82.5 | 9.8e-28 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
++++++ ++ ++++ +Lk++ e Lqr+qRhllGe++ + ++eL+qLe+q++ sl++iRs+K +++l+q+++l+ ke+ l e+n++
Rsa1.0_01119.1_g00015.1 82 NQSDKDLQEKYKDYLNLKSRAEILQRSQRHLLGEEIAGMGVNELEQLERQVDASLRQIRSTKARFMLDQLSDLKTKEEILLETNRD 167
3789999******************************************************************************* PP
K-box 94 Lrkklee 100
L++klee
Rsa1.0_01119.1_g00015.1 168 LKRKLEE 174
****987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.73E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-33 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-23 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.915 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS 60 PSGMTKTVEK YRKHSYATME PNQSDKDLQE KYKDYLNLKS RAEILQRSQR HLLGEEIAGM 120 GVNELEQLER QVDASLRQIR STKARFMLDQ LSDLKTKEEI LLETNRDLKR KLEESDARLT 180 QSLWGASSSA EPSQKQQQQQ QGMSSYQTKV PTQEAGFFKP LQGNVA
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 4e-22 | 76 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-22 | 76 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-22 | 76 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-22 | 76 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | ATU81369 | 0.0 | U81369.1 Arabidopsis thaliana MADS box protein (AGL3) mRNA, complete cds. |
GenBank | AY063894 | 0.0 | AY063894.1 Arabidopsis thaliana putative MADS-box protein AGL3 (At2g03710) mRNA, complete cds. |
GenBank | AY096386 | 0.0 | AY096386.1 Arabidopsis thaliana putative MADS-box protein (AGL3) (At2g03710) mRNA, complete cds. |