PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01115.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 305aa    MW: 34745.8 Da    PI: 5.3745
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01115.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN346.31.1e-147411475115
                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3  75 giipekgkpvegasdsLraWWkekvefdrngpaaiskyqak 115
                               + p+ gkpv+g s+++raWWkekv+fd+ngpaai+ky  +
  Rsa1.0_01115.1_g00008.1  74 ASYPKRGKPVSGYSNNVRAWWKEKVKFDKNGPAAIAKYVEE 114
                              67899*********************************444 PP
2EIN393.54.7e-29132219176266
                              S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XX CS
                     EIN3 176 GkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvs 261
                              G e+ww +lgl k q++ppy+kphdl k+wkv+ Ltavi h+ p++++i++++rqsk+lqdkm+akes+    vlnqee +++++s
  Rsa1.0_01115.1_g00008.1 132 GGEEWWVKLGLGKTQSPPPYRKPHDL-KMWKVGFLTAVIDHLLPHVAKIKRHVRQSKCLQDKMTAKESA----VLNQEECLIQQLS 212
                              88************************.59**************************************96....68999*******9 PP

                              XXXX..X CS
                     EIN3 262 ahss..s 266
                              +++   +
  Rsa1.0_01115.1_g00008.1 213 SDNGasN 219
                              9954221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.7E-1577115No hitNo description
Gene3DG3DSA:1.10.3180.105.6E-30132213IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.53E-24132205IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048735.1E-24132201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGFAHSALLS TNSNSRLSIF ISVYLSLTME NEPNDLASDN VAEVDVSDRY IDVEDLERRM  60
WKDHFAKSAG SWTASYPKRG KPVSGYSNNV RAWWKEKVKF DKNGPAAIAK YVEECLDLQF  120
VLQDLHNATY FGGEEWWVKL GLGKTQSPPP YRKPHDLKMW KVGFLTAVID HLLPHVAKIK  180
RHVRQSKCLQ DKMTAKESAV LNQEECLIQQ LSSDNGASNV TEHTGVEEDL IEMNPSHNNG  240
FEASVEVLQP HGLHENEERD LSTQFQSDSN ILSPFINDLA FDSSRFYSGF HSYCTFDDDF  300
SWFRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A6e-391192169140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01115.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128008.15e-82PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231162e-82EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLM4CV642e-80M4CV64_BRARP; Uncharacterized protein
STRINGBra008110.1-P3e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.17e-85ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]