PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01115.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 339aa    MW: 37087.5 Da    PI: 6.2236
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01115.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.41.9e-05447542
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              C+ +e  e+   C  ++  lC  C ++ H        H++vpl
  Rsa1.0_01115.1_g00004.1  4 QCNVCEAAEAAVLCCADEAALCLACDQKVHAAnklagkHQRVPL 47
                             7******99*********************66899999999986 PP
2zf-B_box25.72.3e-085486335
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                              +kC+ ++e    +fC +++ llC++C +++H 
  Rsa1.0_01115.1_g00004.1 54 IPKCDICQEATGFFFCLQDRALLCRKCDVSIHT 86
                             689******9999******************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000216.15E-7347No hitNo description
SMARTSM003361.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8455299IPR000315B-box-type zinc finger
SMARTSM003364.2E-145299IPR000315B-box-type zinc finger
CDDcd000214.92E-95599No hitNo description
PfamPF006432.5E-65594IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKIQCNVCEA AEAAVLCCAD EAALCLACDQ KVHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEATGFFFCL QDRALLCRKC DVSIHTVNPY VSAHQRFLLT GIRVGLESAT GTGPSTPSND  120
DKTNEMKPTS EPQKMNLDHH QVMLPETKVS DHISTKLPIG SSGSAIGSIP QWQIDEIFGL  180
TDFDQSYEYM ENHGSSKGDT SRRGDSDSSS MMRSGDEDGE EDNNNNCLGG GETSWAVPQI  240
HSPPTASGLN WPRHFNHHSV FVPDISSSTP YTGSSPRQRR RCGENPTRLM GVKVPDWRCV  300
VAREVRLQSP TAKGVSFLDD KDVCWSFLDG IRVCFSFNS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01115.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324451e-143AC232445.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006F18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442433.10.0PREDICTED: B-box zinc finger protein 22-like isoform X1
SwissprotQ9SYM21e-150BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D3CVZ01e-177A0A0D3CVZ0_BRAOL; Uncharacterized protein
STRINGBo6g081560.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-108light-regulated zinc finger protein 1