PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01101.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 408aa    MW: 45567.3 Da    PI: 8.7821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01101.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-066688123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C++C++ F r  nL+ H r+H
  Rsa1.0_01101.1_g00010.1 66 YVCEICNQGFQRDQNLQMHRRRH 88
                             9*********************9 PP
2zf-C2H213.80.00017145166223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               C+ C+k +  +s++k H++t+
  Rsa1.0_01101.1_g00010.1 145 ICERCSKGYAVQSDYKAHLKTC 166
                              7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-56389No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PfamPF128740.026684No hitNo description
PROSITE profilePS5015710.976688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355160108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001135165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MIDYERSKNI NHHQNPPPSS SSSDLLPDGN GAAVTQKRKR RPAGTPDPEA EVVSLSPRTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRETT EEVKKRVYVC PEPTCLHHNP  120
CHALGDLVGI KKHFRRKHSN HKQWICERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD NCTMRRSQQL SGHRLQQQQQ HTSNVTQTAS VAKNDNLSVG PVLPGHPLLR  240
QAPPPSSDLL YPFVGSCATT GSSIELQLLP SRASADETSL SLSIGMEPTT SSYEKGETSL  300
LLGQREEAKR QIEIAELEFS EAKRIRQHAK AELHKAQLYR EEASRRISAT MMQITCHNCK  360
KHFQAVAASA PPPPLPQPPC TDESTSLAVS YVSSATTEGE KASDRASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17142192555Zinc finger protein JACKDAW
5b3h_F1e-17142192555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01101.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452684.10.0PREDICTED: protein indeterminate-domain 14 isoform X1
RefseqXP_018452686.10.0PREDICTED: protein indeterminate-domain 14 isoform X2
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLM4CJ990.0M4CJ99_BRARP; Uncharacterized protein
STRINGBra004283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]