PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01097.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 493aa    MW: 55170.4 Da    PI: 8.1481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01097.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-1763109148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Rsa1.0_01097.1_g00008.1  63 KGGWTPEEDETLRQAVCKFNGKSWKKIAEFFP-DRTEVQCLHRWQKVL 109
                              688*****************************.************986 PP
2Myb_DNA-binding57.53e-18115161148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+WT++Ede+++++vk++G+  W+ I++ ++ gR +kqc++rw+++l
  Rsa1.0_01097.1_g00008.1 115 KGPWTQQEDEKIIELVKKYGPAKWSIISNSLP-GRIGKQCRERWHNHL 161
                              79******************************.*************97 PP
3Myb_DNA-binding57.82.5e-18167210146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Rsa1.0_01097.1_g00008.1 167 KDAWTPEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 210
                              679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1658109IPR017930Myb domain
SuperFamilySSF466891.36E-1660118IPR009057Homeodomain-like
SMARTSM007177.3E-1462111IPR001005SANT/Myb domain
PfamPF002491.9E-1563109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2265121IPR009057Homeodomain-like
CDDcd001672.17E-1266109No hitNo description
PROSITE profilePS5129431.46110165IPR017930Myb domain
SuperFamilySSF466895.99E-32112208IPR009057Homeodomain-like
SMARTSM007172.7E-17114163IPR001005SANT/Myb domain
PfamPF002494.0E-17115161IPR001005SANT/Myb domain
CDDcd001672.72E-14117161No hitNo description
Gene3DG3DSA:1.10.10.605.2E-26122168IPR009057Homeodomain-like
PROSITE profilePS5129422.885166216IPR017930Myb domain
SMARTSM007176.8E-17166214IPR001005SANT/Myb domain
PfamPF002491.1E-16167210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23169215IPR009057Homeodomain-like
CDDcd001671.27E-12169212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEKECVENKQ SRAAAAAASC SSVSEDSTGG SSSTFLKSPA AVASPATVSP THRRTSGPIR  60
RAKGGWTPEE DETLRQAVCK FNGKSWKKIA EFFPDRTEVQ CLHRWQKVLN PDLIKGPWTQ  120
QEDEKIIELV KKYGPAKWSI ISNSLPGRIG KQCRERWHNH LNPGINKDAW TPEEELALMN  180
AHRVHGNKWA EIAKVLPGRT DNSIKNHWNS SLKKKSEFFL ANGGLPTNRV PDSATKRPVY  240
LHRRDSVSVA QTSSGTTQIN KLDGERKEQL NSSVPLEEVS PMAGFEEYVR SSQLPKPEPS  300
PENGYHLNDK KPQTEDHMAS EADKQRMYGY ECGCSPSASS PVIFFTPPPP CRKEYSNNGS  360
APRSPESFLR EAARTFPNTP SIFRKRRRKV VVVEDNNRTD EVEEEAAKEV VDDGKVNGIS  420
ERADCEEEKE NSGSNAYNLS PPYRIRSKRT AVFKSRQLEF ISPEEEKVDD ETKSSEKDKL  480
LDGGDSQVSG QDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68622155158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68622155158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383387RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01097.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434466.10.0PREDICTED: transcriptional activator Myb-like
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A0D3AEW80.0A0A0D3AEW8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FX870.0A0A3P6FX87_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g144510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]