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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01088.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 31573.1 Da PI: 8.7831 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.8e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT++E+ l+ +v ++G+g W+tI + k R+ ++k++w++ Rsa1.0_01088.1_g00006.1 5 KQKWTAQEETALKAGVLKHGTGKWRTILSDPEftsilKSRSNVDLKDKWRN 55 79***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.347 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.54E-18 | 6 | 56 | No hit | No description |
SMART | SM00526 | 4.5E-7 | 110 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 14.485 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 6.53E-9 | 121 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 5.0E-5 | 122 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.7E-7 | 122 | 185 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGAPKQKWTA QEETALKAGV LKHGTGKWRT ILSDPEFTSI LKSRSNVDLK DKWRNISVTA 60 MYGSRKKAKL ALKKITSSHD DDSATALTIV ALANGVQHIS SPPVSCLPPP PLQPDFEGLF 120 TSVDELILEA ITNFKRHLGP DGKSILLYVE EKHNMQPDMK RLVTSRLKHL VNVGTIVKIK 180 HRYRICRNGG EQSSPQLFLE GNKENGVQQH LTQYQADGEL FMIKGMTAQE AAAAAARAVA 240 EAEFAISEAE EAAREADEAE AEAEAAHIFA KAAIKALKYR MQCSEAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01088.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618919.1 | 1e-162 | PREDICTED: telomere repeat-binding factor 3 | ||||
Refseq | XP_013699016.1 | 1e-162 | telomere repeat-binding factor 3-like | ||||
Refseq | XP_013699017.1 | 1e-162 | telomere repeat-binding factor 3-like | ||||
Swissprot | Q9M2X3 | 1e-106 | TRB3_ARATH; Telomere repeat-binding factor 3 | ||||
TrEMBL | A0A0D3A9K2 | 1e-160 | A0A0D3A9K2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g081300.1 | 1e-161 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3809 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 1e-95 | telomere repeat binding factor 3 |
Publications ? help Back to Top | |||
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