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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01083.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 524aa MW: 57438.6 Da PI: 8.769 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 202 | 222 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+ + G Ck Gd+C+F H+ Rsa1.0_01083.1_g00005.1 202 VCKFWKA-GNCKKGDQCSFLHS 222 5******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-6 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 197 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 198 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 202 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 202 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.5E-9 | 223 | 265 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 1.9E-4 | 228 | 267 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 5.13E-43 | 228 | 520 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50294 | 20.118 | 235 | 440 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.984 | 235 | 276 | IPR001680 | WD40 repeat |
Pfam | PF11715 | 1.4E-5 | 250 | 283 | No hit | No description |
PRINTS | PR00320 | 6.1E-8 | 254 | 268 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 254 | 268 | IPR019775 | WD40 repeat, conserved site |
Gene3D | G3DSA:2.140.10.10 | 8.2E-7 | 266 | 338 | IPR027295 | Quinoprotein alcohol dehydrogenase-like domain |
SMART | SM00320 | 270 | 308 | 345 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 2.3E-27 | 339 | 520 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 5.5E-4 | 353 | 391 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 8.1E-5 | 357 | 391 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.442 | 375 | 400 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 378 | 392 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 6.1E-8 | 378 | 392 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 3.2E-5 | 394 | 431 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0033 | 396 | 430 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 9.138 | 401 | 430 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 6.1E-8 | 418 | 432 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.8 | 481 | 518 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MISSCFQFRC PLPLDLRRLF ALITQEARHE LGSLQRIGGF LIDSLGTPWE ACYSSEVFCG 60 SSWMKQAAIV SLCGYSLLKL VFFSMCFYSM SYYKAPRRNF GVERQQGFVA DVVPRRPYDN 120 RMKNGPNKWS RNLVWTASDA NKPMKNDTTY VSTKPHVSGA RSSSVSNLLR KDAAHGQRSS 180 SVSDTRGWGP NDRGIPKSKE CVCKFWKAGN CKKGDQCSFL HSWTSLPGMV MVAALEGHKK 240 DLKGIALPQG SDKLFSASSD GTLRIWDCHT GQCVHTINLQ AEAGSLISEG PWVFLGLPNA 300 VKAFNVQTSK DLHLNGVVAG RVSAIIVGNG MLFAGTSSGS ISVWKATDTE SDPFTYLTSL 360 EGHHTGEVTC FIVGGQQLYS GSVDRTIKVW DLNTLECTMT LRQHTDTVTS LLCWDRYLIS 420 SSLDGTIKVW ACSEHSILKV TNTRRQGQSV HTLSGMTDAE GKPIVFCSYQ NGTVSICDLP 480 SFEERGKMFS TNTVGAITVG PEGLLFTGDK SGKLRVWSLA GTKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 6e-17 | 235 | 522 | 11 | 325 | Tako8 |
6g6n_A | 6e-17 | 235 | 522 | 11 | 325 | Tako8 |
6g6n_B | 6e-17 | 235 | 522 | 11 | 325 | Tako8 |
6g6n_C | 6e-17 | 235 | 522 | 11 | 325 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01083.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485361.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1 | ||||
Swissprot | Q9FKR9 | 0.0 | C3H59_ARATH; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A3P6C0F6 | 0.0 | A0A3P6C0F6_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo4g140040.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40880.1 | 0.0 | C3H family protein |