PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01083.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 461aa    MW: 50431.2 Da    PI: 9.2389
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01083.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-08141160626
                              -SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                              C+f+ + G Ck Gd+C+F H+
  Rsa1.0_01083.1_g00004.1 141 CKFWKA-GNCKKGDQCSFLHS 160
                              ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.1E-5135161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6137160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-6140160IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5141160IPR000571Zinc finger, CCCH-type
SMARTSM003201.9E-4166205IPR001680WD40 repeat
SuperFamilySSF509781.19E-42168214IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.4E-42168456IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029418.932173377IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.017173214IPR001680WD40 repeat
PfamPF117157.9E-6188221No hitNo description
PROSITE patternPS006780192206IPR019775WD40 repeat, conserved site
PRINTSPR003204.3E-8192206IPR020472G-protein beta WD-40 repeat
SMARTSM00320110245282IPR001680WD40 repeat
SuperFamilySSF509781.19E-42252457IPR017986WD40-repeat-containing domain
SMARTSM003207.8E-4290328IPR001680WD40 repeat
PfamPF004004.8E-5294328IPR001680WD40 repeat
PROSITE profilePS5008210.542312337IPR001680WD40 repeat
PRINTSPR003204.3E-8315329IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780315329IPR019775WD40 repeat, conserved site
SMARTSM003203.4E-5331368IPR001680WD40 repeat
PfamPF004000.0021333367IPR001680WD40 repeat
PROSITE profilePS500829.272338367IPR001680WD40 repeat
PRINTSPR003204.3E-8355369IPR020472G-protein beta WD-40 repeat
SMARTSM003201.8418455IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKQDRLCGYS LLKLVFFSMC FYSMSYYKAP RRYSNGRNFG VERQQGFVAD IAPRRPYVPY  60
ENKGPNKWSR NLVWTASDGN MPRKNGSTYG STKPQVPGAR SSVSNLQRKD AAYGQRSSSV  120
SDKRGWVSND RGSPKSEVCV CKFWKAGNCK KGDQCSFLHS WTSLSGMVMV AALEGHKKDL  180
KGIALPQGSD KLFSASSDGT LRIWDCHTGQ CVQTINLQAE AGSLISEGPW VFLGLPNAVK  240
AFNVQTSKDL HLNGVIGQVR AMTVGNGMLF AGTSSGSISL WKATDTESDP FTYLTSLEGH  300
HSGEVTCFIV GGQRLYSGSV DRTIKVWDLN TLECTMTLRQ HTDTVTSLLC WDQYLISSSL  360
DGTIKVWACS ENGSLKVTNT RRQGQSVHTL SGMTDAEGKP IVFCSYQNGT VSICDLPSFE  420
ERGKMFSTNT VGAITVGPEG LLFTGDKSGK LRVWSLAGTK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-1717245610323Tako8
6g6n_A2e-1717245610323Tako8
6g6n_B2e-1717245610323Tako8
6g6n_C2e-1717245610323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01083.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485361.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C0F60.0A0A3P6C0F6_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein