PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 399aa MW: 44317.3 Da PI: 4.343

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01077.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.5	1.9e-47	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diy++eP+dLp k +k+++ +w+fF++r+kky+tg r+nrat+ gyWk Rsa1.0_01077.1_g00010.1 6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYNFEPSDLPdKsYIKSGDLKWHFFCPREKKYSTGVRANRATACGYWK 90 579**********************999.89**********96347778888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +tgk+++vl+ +ge+ g ktLv++ g++p+ge+tdWvmheyrle Rsa1.0_01077.1_g00010.1 91 TTGKERDVLC-NGEVAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134 ******.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-56	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	51.951	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYNFEPSD LPDKSYIKSG 60 DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR 120 GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKDEDWSDEE 180 QDTGVRATNA PAVLQGETSL VVASSHVPDK DCFVGMIAES CVSDFLQATT TATGLPQLND 240 AANTPLSAAP LLDSNSTASL APPTLEAPNN DDDIYSMLDL FVDEDEYFRF SEFNNTEMRH 300 DPNVSAPICL GEGEDIFSEL PDFSNMQHNS MPRTPSFDLI ENSELYLELQ DLTAPLAPPQ 360 IGNASDSYLS YQGQFDFSTA ANDDDPYGFS ASMGQGPDI

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYNFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKDEDWSDEE  180
QDTGVRATNA PAVLQGETSL VVASSHVPDK DCFVGMIAES CVSDFLQATT TATGLPQLND  240
AANTPLSAAP LLDSNSTASL APPTLEAPNN DDDIYSMLDL FVDEDEYFRF SEFNNTEMRH  300
DPNVSAPICL GEGEDIFSEL PDFSNMQHNS MPRTPSFDLI ENSELYLELQ DLTAPLAPPQ  360
IGNASDSYLS YQGQFDFSTA ANDDDPYGFS ASMGQGPDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-43	6	156	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01077.1_g00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470726.1	0.0	PREDICTED: NAC domain-containing protein 82-like
Swissprot	Q9FY82	0.0	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A3P6ABT9	0.0	A0A3P6ABT9_BRACM; Uncharacterized protein
STRING	Bra028640.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3692	25	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	1e-170	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]