PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01062.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 234aa    MW: 25262.5 Da    PI: 7.6343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01062.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-0596118123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ CgksF++   L  H  +H
  Rsa1.0_01062.1_g00001.1  96 YKCSVCGKSFPSYQALGGHKTSH 118
                              9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-995118No hitNo description
SMARTSM003550.002296118IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-1496120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-496118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78396123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-9155182No hitNo description
PfamPF139124.9E-12159184IPR007087Zinc finger, C2H2
SMARTSM003550.35160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12160182IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALDTLNSPT STTTTTTTTT TAPSPFLTEP ENLESWTKRK RTKRHRIDDQ ANPPSEEEYL  60
ALCLLMLARG SSDDNHHSSH PPLPPPPPSD HHHRDYKCSV CGKSFPSYQA LGGHKTSHRK  120
PVSNNNNNIN HDGNSNSGNG SITNNGNISN GLIGRSGKTH KCSICFKSFP SGQALGGHKR  180
CHYDGGNGNS YVNGNGSNSH GFDLNLPADQ VFEVSCDETL GKSQLSGEET RSPL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01062.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469128.11e-172PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW12e-63AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3P6EYY81e-110A0A3P6EYY8_BRAOL; Uncharacterized protein
STRINGBo1g081350.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.18e-69C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]