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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01016.1_g00022.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 473aa MW: 52150.7 Da PI: 7.9652 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01016.1_g00022.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 106.9 | 1e-33 | 219 | 275 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H he
Rsa1.0_01016.1_g00022.1 219 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSQ-DGQVTEIIYKGQHSHE 275
8****************************************.***************8 PP
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2 | WRKY | 105.8 | 2.2e-33 | 373 | 431 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
Rsa1.0_01016.1_g00022.1 373 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 431
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MAEKEEQQKQ PLTLNSSTRA SSRPTISLPP RPFGEVFFSG GLGFSPGPMT LVSNFLSDPD 60 ELKTFSQLLA GAMASPAVAT AAAVVATAHQ TQVSSVGDVD PRFKQNRPTG LMITQPPSMF 120 TVPPGLSPAT LLDSPSFFGL FSPIQGSFGM THQQALAQVT AQAVHGNSVQ SQSEHPSSTE 180 QEQQTSLTET PSFQDSLEVS VYEHRSSSSQ PQTADKPADD GYNWRKYGQK QVKGSDFPRS 240 YYKCTHPACP VKKKVERSQD GQVTEIIYKG QHSHEPPQNK TKRDSNGSSR SSDVATSNSG 300 LNKNKRDQET SQVTTTTEQI CEASDSEEVE TSVEPDPKRR NMEVRVTEPV TSTQRTVTEP 360 RIIVQTTSEV DLLDDGFRWR KYGQKVVKGN PYPRSYYKCT TPGCGVRKHV ERAANDPKAV 420 VTTYEGKHNH DVPAARNSSH QLRPNSNLHN TSMDNINQEQ RVARLRLKEE QIT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC246566 | 0.0 | KC246566.1 Brassica napus WRKY transcription factor 3.2 (WRKY3.2) mRNA, complete cds. |