PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01016.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 473aa    MW: 52150.7 Da    PI: 7.9652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01016.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33219275259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H he
  Rsa1.0_01016.1_g00022.1 219 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSQ-DGQVTEIIYKGQHSHE 275
                              8****************************************.***************8 PP
2WRKY105.82.2e-33373431159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Rsa1.0_01016.1_g00022.1 373 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 431
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29209277IPR003657WRKY domain
PROSITE profilePS5081123.743213277IPR003657WRKY domain
SuperFamilySSF1182907.85E-26216277IPR003657WRKY domain
SMARTSM007741.6E-36218276IPR003657WRKY domain
PfamPF031067.2E-26219274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36358433IPR003657WRKY domain
SuperFamilySSF1182901.24E-29365433IPR003657WRKY domain
PROSITE profilePS5081137.757368433IPR003657WRKY domain
SMARTSM007744.4E-39373432IPR003657WRKY domain
PfamPF031063.8E-26374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEKEEQQKQ PLTLNSSTRA SSRPTISLPP RPFGEVFFSG GLGFSPGPMT LVSNFLSDPD  60
ELKTFSQLLA GAMASPAVAT AAAVVATAHQ TQVSSVGDVD PRFKQNRPTG LMITQPPSMF  120
TVPPGLSPAT LLDSPSFFGL FSPIQGSFGM THQQALAQVT AQAVHGNSVQ SQSEHPSSTE  180
QEQQTSLTET PSFQDSLEVS VYEHRSSSSQ PQTADKPADD GYNWRKYGQK QVKGSDFPRS  240
YYKCTHPACP VKKKVERSQD GQVTEIIYKG QHSHEPPQNK TKRDSNGSSR SSDVATSNSG  300
LNKNKRDQET SQVTTTTEQI CEASDSEEVE TSVEPDPKRR NMEVRVTEPV TSTQRTVTEP  360
RIIVQTTSEV DLLDDGFRWR KYGQKVVKGN PYPRSYYKCT TPGCGVRKHV ERAANDPKAV  420
VTTYEGKHNH DVPAARNSSH QLRPNSNLHN TSMDNINQEQ RVARLRLKEE QIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-45219434878Probable WRKY transcription factor 4
2lex_A7e-45219434878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01016.1_g00022.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465660.0KC246566.1 Brassica napus WRKY transcription factor 3.2 (WRKY3.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477461.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A078I6Y00.0A0A078I6Y0_BRANA; BnaA06g33730D protein
TrEMBLA0A3P5YLP50.0A0A3P5YLP5_BRACM; Uncharacterized protein
STRINGBra024780.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]