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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01016.1_g00009.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 256aa MW: 29126.9 Da PI: 8.6277 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01016.1_g00009.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.7 | 9.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
Rsa1.0_01016.1_g00009.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 84 | 3.3e-28 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
++++++ ++ +q++ +Lk+++e Lq++qRhllGe++ ++ + eL+qLe+q+++sl++iRs+K + +l+q+++l+ ke++l e+n++
Rsa1.0_01016.1_g00009.1 82 NQSAKDLQEKYQDYLNLKSRVEVLQHSQRHLLGEEIAEMGVDELEQLERQVDTSLRQIRSTKARSMLDQLSDLKTKEEMLLETNRD 167
3678899******************************************************************************* PP
K-box 94 Lrkklee 100
L++kl+e
Rsa1.0_01016.1_g00009.1 168 LKRKLDE 174
****986 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.11E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-24 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.154 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS 60 PSGMTKTVEK YRKHSYATMD PNQSAKDLQE KYQDYLNLKS RVEVLQHSQR HLLGEEIAEM 120 GVDELEQLER QVDTSLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLKR KLDESDAALN 180 QTLWGASSSV EHSQQQQIGM ASYHENPPSQ EVGFFRPLQG NVALQISHYN PGVANASNSA 240 TTSQNVINGF FPGWMV
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 3e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ508052 | 0.0 | AJ508052.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL3-a (agl3-a gene). |