PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01006.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 639aa    MW: 71722.7 Da    PI: 7.7266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01006.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.11.3e-1262596311373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                              lv+lL+ c ea+++++ +++++++ar   lasp+g +pm+Rl++y+ eALa r++r+++++++  pp +t  +++++   al++++
  Rsa1.0_01006.1_g00012.1 259 LVNLLTGCLEAIRTSNIAAINRFIARTGALASPRGsTPMTRLISYYIEALALRVSRMWPHIFHVAPPPRTL-EEEDDDHDALRFLN 343
                              6899*******************************99*************************988776665.5677778999**** PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                              +v+Pi+kf h taN+++l+a+eg+ervH+iDf+i+qGlQWp+++q+Las+p++p ++RiTgvg+    sk+el etg+rL+ fAe+
  Rsa1.0_01006.1_g00012.1 344 QVTPIPKFIHYTANEMLLRAFEGKERVHVIDFGIKQGLQWPSFFQTLASKPNPPRHVRITGVGE----SKHELDETGDRLRGFAEA 425
                              ****************************************************************....9***************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +++pfef++++++rled++l++L+vk+gEa+aVn+v q+h++l++ +  +   ++++ lv+s++P  vvv+eqe +h+s ++  r+
  Rsa1.0_01006.1_g00012.1 426 MDLPFEFHPVIVDRLEDVRLWMLHVKEGEAVAVNCVSQMHKTLHDGTGAAF--RSFVGLVRSTNPVAVVVAEQEGEHDSVQLEGRV 509
                              *******************************************77666665..99******************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +++l+yysa+fd +++ l+++s  r+k+E++++grei+n+vaceg++rrerh  +++Wr+++e+ GF+++ ++e+++ q ++llr+
  Rsa1.0_01006.1_g00012.1 510 FNSLKYYSAVFDVMHKHLGADSLVRVKIEEMVFGREIRNIVACEGSHRRERHVGFGQWRRMMEQLGFRSLGVREREVLQGRMLLRM 595
                              ************************************************************************************** PP

                     GRAS 344 vk..sdg.yrve...eesgslvlgWkdrpLvsvSaW 373
                              ++  ++g ++ve   e+ g ++l W ++pL++vSaW
  Rsa1.0_01006.1_g00012.1 596 YGegDEGlFNVErsdEDGGGVTLRWLEQPLYTVSAW 631
                              *9844559***98766678888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.193233606IPR005202Transcription factor GRAS
PfamPF035144.4E-124259631IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MLAGYSSSSL LSPTRRLRNE AVAATVSVHF PMNTQRLDLP CSSSFSRKET PSLGRSISLD  60
NSYNNNKPIE RKTGGCSLKQ SIKLPPLATT RGNKQGFSWN NDSNNRGKKS LKRLAEENKD  120
ESCLSRVKKR QRSQTDDDNN RSFWFEQKVP ALPFSLTCSG DDDDEEKVWF APSEVISQPL  180
QSNPNWANSV ITDLAGIGGH KDIEVSRASG SSTSASSSSD RHRVPKPTNG SMNPYPHGVN  240
TEERTIENNN NHSQRDLELV NLLTGCLEAI RTSNIAAINR FIARTGALAS PRGSTPMTRL  300
ISYYIEALAL RVSRMWPHIF HVAPPPRTLE EEDDDHDALR FLNQVTPIPK FIHYTANEML  360
LRAFEGKERV HVIDFGIKQG LQWPSFFQTL ASKPNPPRHV RITGVGESKH ELDETGDRLR  420
GFAEAMDLPF EFHPVIVDRL EDVRLWMLHV KEGEAVAVNC VSQMHKTLHD GTGAAFRSFV  480
GLVRSTNPVA VVVAEQEGEH DSVQLEGRVF NSLKYYSAVF DVMHKHLGAD SLVRVKIEEM  540
VFGREIRNIV ACEGSHRRER HVGFGQWRRM MEQLGFRSLG VREREVLQGR MLLRMYGEGD  600
EGLFNVERSD EDGGGVTLRW LEQPLYTVSA WGIGGSSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6026663126378Protein SCARECROW
5b3h_A7e-6026663125377Protein SCARECROW
5b3h_D7e-6026663125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01006.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452048.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A397XT560.0A0A397XT56_BRACM; Uncharacterized protein
STRINGBra027620.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein